View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4895_high_7 (Length: 284)

Name: NF4895_high_7
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4895_high_7
NF4895_high_7
[»] chr3 (31 HSPs)
chr3 (16-284)||(968626-968894)
chr3 (176-281)||(1940567-1940672)
chr3 (177-281)||(1936969-1937073)
chr3 (175-275)||(1931141-1931241)
chr3 (190-280)||(1891066-1891156)
chr3 (183-281)||(803213-803311)
chr3 (183-281)||(2696727-2696825)
chr3 (179-241)||(1022487-1022549)
chr3 (175-281)||(2678386-2678492)
chr3 (175-241)||(4142121-4142187)
chr3 (175-241)||(4157931-4157997)
chr3 (180-277)||(3754562-3754659)
chr3 (174-281)||(2686298-2686408)
chr3 (178-241)||(1007459-1007522)
chr3 (175-245)||(7432041-7432111)
chr3 (208-281)||(1897697-1897770)
chr3 (208-281)||(1907143-1907216)
chr3 (174-239)||(13498224-13498289)
chr3 (190-282)||(2459232-2459324)
chr3 (175-241)||(989394-989460)
chr3 (175-237)||(997578-997640)
chr3 (175-237)||(1013968-1014030)
chr3 (190-239)||(2456249-2456298)
chr3 (208-281)||(2931870-2931943)
chr3 (175-240)||(9608331-9608396)
chr3 (177-269)||(956351-956443)
chr3 (176-239)||(2442039-2442102)
chr3 (175-278)||(899967-900072)
chr3 (190-239)||(771501-771550)
chr3 (174-239)||(12133097-12133162)
chr3 (190-238)||(2631358-2631406)
[»] chr8 (1 HSPs)
chr8 (175-281)||(19727839-19727945)
[»] scaffold0200 (1 HSPs)
scaffold0200 (192-281)||(782-872)
[»] chr5 (7 HSPs)
chr5 (192-281)||(41973474-41973564)
chr5 (175-241)||(11081811-11081877)
chr5 (179-241)||(23766853-23766915)
chr5 (179-241)||(23816701-23816763)
chr5 (181-241)||(23769639-23769699)
chr5 (181-241)||(23819487-23819547)
chr5 (188-239)||(20292995-20293046)
[»] chr4 (2 HSPs)
chr4 (177-281)||(20019761-20019865)
chr4 (175-236)||(22672114-22672175)
[»] scaffold0044 (1 HSPs)
scaffold0044 (190-240)||(89142-89192)
[»] chr7 (3 HSPs)
chr7 (175-239)||(1078147-1078211)
chr7 (190-229)||(27755733-27755772)
chr7 (190-240)||(39298976-39299026)
[»] chr2 (2 HSPs)
chr2 (190-239)||(36577366-36577415)
chr2 (177-277)||(20537980-20538080)
[»] chr6 (1 HSPs)
chr6 (176-236)||(370773-370833)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 968894 - 968626
Alignment:
Q  16 acttctagggaattttccaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcggataccatatttgtctgtacacttcagca 115  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  968894 acttctagggcattttctaaccgagtacacgcaaaagtaccatttattgaattgtaaataatccattttcgggtaccatatttgcctgtacacttcagca 968795  T
Q  116 acatttggttttcctcaaaaatatttactatatcaataataatgtaagttataggaagataagaaatagtgaataatttagtccatgactctttatttct 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  968794 acacttggttttcctcaaaaatatttactatatcaataataatataagttataggaagataagaaatagtgaataatttagtccatgactctttatttcc 968695  T
Q  216 atgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaatcc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  968694 atgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaatcc 968626  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 1940567 - 1940672
Alignment:
Q  176 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacac 275  Q
    ||||||||||||| ||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| ||||  ||||||||| |||| ||||||||    
T  1940567 aagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgaccaataacaatgcacaaagaatctctcaacac 1940666  T
Q  276 acccaa 281  Q
    ||||||    
T  1940667 acccaa 1940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 1936969 - 1937073
Alignment:
Q  177 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacaca 276  Q
    |||||||||||| ||||||| ||| || ||||||||| ||| ||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||    
T  1936969 agaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctcaacaca 1937068  T
Q  277 cccaa 281  Q
    |||||    
T  1937069 cccaa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 1931141 - 1931241
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaaca 274  Q
    |||||||||||||| ||||||||||| || |||||||||| ||||||| |||||||||||||||||||| | |||| |||||| ||||||||||| ||||    
T  1931141 taagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcatgatcaataaccatgcataaacaatcccttaaca 1931240  T
Q  275 c 275  Q
    |    
T  1931241 c 1931241  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 1891066 - 1891156
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacaccca 280  Q
    ||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| | || || ||||||||||||||||||||||||||    
T  1891066 aatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaacacaccca 1891156  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 803213 - 803311
Alignment:
Q  183 agtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    |||||| || |||||||| ||||||||||||| || ||| ||||||||||||||||||| |||   |||||||||||| ||||||||||||| ||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaatccctcaacatacccaa 803311  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 281
Target Start/End: Original strand, 2696727 - 2696825
Alignment:
Q  183 agtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    |||||| |||||| |||| ||||||||||||| || ||||||||||| ||||||||||||| ||  ||||| || ||| |||||||| |||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagcaatcccttaacacacccaa 2696825  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 1022549 - 1022487
Alignment:
Q  179 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||||| |||||||||||||    
T  1022549 aaatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcat 1022487  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 2678386 - 2678492
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaaca 274  Q
    |||| ||||||||| |||||||||||||||||||| |||| || ||  ||||||||||||||||||| |||   | ||| |||||| |||||| |||| |    
T  2678386 taaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatccttcaaaa 2678485  T
Q  275 cacccaa 281  Q
    |||||||    
T  2678486 cacccaa 2678492  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 4142121 - 4142187
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||| ||||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  4142121 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 4157931 - 4157997
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    ||||| |||||||| ||||||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  4157931 taagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 3754659 - 3754562
Alignment:
Q  180 aatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacac 277  Q
    |||||| || ||||||||||| ||||||||||||| || ||||||||||||||||||||||  |||   | ||| |||||| ||||||||||| ||||    
T  3754659 aatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctcaaaacac 3754562  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 2686298 - 2686408
Alignment:
Q  174 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttc---ataacccaaacatcatgaccgataatcatgcacaaacaatccctc 270  Q
    ||||| ||||||||| |||||| |||| |||||||| |||| || |||||||   |||||||||||||||| |||    |||| ||||||||||||||||    
T  2686298 ataaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctc 2686397  T
Q  271 aacacacccaa 281  Q
    || ||||||||    
T  2686398 aaaacacccaa 2686408  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 1007522 - 1007459
Alignment:
Q  178 gaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    ||||||||||| ||||||||||| ||||| ||||||| || ||||||||| |||||||||||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcat 1007459  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 7432041 - 7432111
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgacc 245  Q
    |||||||| ||||| ||||||||||| || |||||||||| || ||||||||||  |||||||||||||||    
T  7432041 taagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgacc 7432111  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 1897697 - 1897770
Alignment:
Q  208 ttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    ||||||| |||||||||||||| ||||||||||||||| |  | || ||| ||||||||||| |||||||||||    
T  1897697 ttatttccatgttccttcataatccaaacatcatgaccaaacaccaggcaaaaacaatccctaaacacacccaa 1897770  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 1907143 - 1907216
Alignment:
Q  208 ttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    ||||||| |||||||||||||| ||||||||||||||| |  | || ||| ||||||||||| |||||||||||    
T  1907143 ttatttccatgttccttcataatccaaacatcatgaccaaacaccaggcataaacaatcccttaacacacccaa 1907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 13498289 - 13498224
Alignment:
Q  174 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    |||||| ||| || ||||||||||||| ||||||||||||| || ||||||||||| |||||||||    
T  13498289 ataagagatattgtataatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 2459324 - 2459232
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaat 282  Q
    ||||| ||||| ||||||||||||| || ||||||||||| ||||||| |||||||   ||| ||| |||| ||||| ||||| |||||||||    
T  2459324 aattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaattatggacaagcaatcactcaatacacccaat 2459232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 989460 - 989394
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||||||||| ||||||||||| |||||||||||||  |  || ||||| |||||||||||||    
T  989460 taagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 989394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 997640 - 997578
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaaca 237  Q
    ||||| || ||||||| ||||||||| ||||||||||||| || ||||||||| |||||||||    
T  997640 taagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 1014030 - 1013968
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaaca 237  Q
    ||||| || ||||||| ||||||||| ||||||||||||| || ||||||||| |||||||||    
T  1014030 taagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 2456298 - 2456249
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    ||||||||||| || |||||||||| || |||||||||||||||||||||    
T  2456298 aatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 2931943 - 2931870
Alignment:
Q  208 ttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    ||||||| |||||||||||||| ||||||||| ||||| |  | || ||| ||||||||||| |||||||||||    
T  2931943 ttatttccatgttccttcataatccaaacatcttgaccaaacaccaggcataaacaatcccttaacacacccaa 2931870  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 9608331 - 9608396
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatca 240  Q
    ||||||| | || ||||||||||||| || ||| |||||| || ||||||||||||||||||||||    
T  9608331 taagaaacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 956443 - 956351
Alignment:
Q  177 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccct 269  Q
    ||||||| |||| ||||||  ||| |||||||| |||| || ||||||||||| |||||||||   ||| | |||||||||||| ||||||||    
T  956443 agaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccct 956351  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 2442102 - 2442039
Alignment:
Q  176 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    |||||| |||||| ||||||||||| || |||||||||| ||  |||||||||| |||||||||    
T  2442102 aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 900072 - 899967
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcata--acccaaacatcatgaccgataatcatgcacaaacaatccctcaa 272  Q
    |||||||  ||||| |||||| || | |||||||| |||| || ||| ||||||  ||||||||||||||||    |||||||||||| || ||||||||    
T  900072 taagaaacggtgaacaatttaatcgaagactctttgtttcaatattcattcatataacccaaacatcatgacaagaaatcatgcacaagcattccctcaa 899973  T
Q  273 cacacc 278  Q
    ||||||    
T  899972 cacacc 899967  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 771501 - 771550
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    ||||||||||| || ||| |||||| || |||||||||||||||||||||    
T  771501 aatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 12133162 - 12133097
Alignment:
Q  174 ataagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    |||||||| | |||| ||||||||||| |||||| |||||| ||  ||| ||||||||||||||||    
T  12133162 ataagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 2631406 - 2631358
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacat 238  Q
    ||||||||||| ||||||| ||||| || ||||||||||| ||||||||    
T  2631406 aatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 19727945 - 19727839
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaaca 274  Q
    |||||||||||||| | ||||||||||||||||||||||  || |||  |||||||||||||||||| |||   || ||||||||||||||  | |||||    
T  19727945 taagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatttcgcaaca 19727846  T
Q  275 cacccaa 281  Q
    |||||||    
T  19727845 cacccaa 19727839  T

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Target: scaffold0200 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 782 - 872
Alignment:
Q  192 tttagtccatgactctttatttctatgttccttcataacccaaacatcatga-ccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||    
T  782 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaa 872  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 41973474 - 41973564
Alignment:
Q  192 tttagtccatgactctttatttctatgttccttcataacccaaacatcatga-ccgataatcatgcacaaacaatccctcaacacacccaa 281  Q
    ||||||||||||| ||||||||  || ||||||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||    
T  41973474 tttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaa 41973564  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 11081877 - 11081811
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||| |||||| || ||||||||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  11081877 taaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 23766853 - 23766915
Alignment:
Q  179 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  23766853 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23766915  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 23816701 - 23816763
Alignment:
Q  179 aaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||||| ||||||||||| ||||||||||||| || ||| ||||||| |||||||||||    
T  23816701 aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23816763  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 23769639 - 23769699
Alignment:
Q  181 atagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||| ||||||||||| ||| ||||||| | || ||||||||||| |||||||||||    
T  23769639 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 23819487 - 23819547
Alignment:
Q  181 atagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcat 241  Q
    |||||||| ||||||||||| ||| ||||||| | || ||||||||||| |||||||||||    
T  23819487 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 20293046 - 20292995
Alignment:
Q  188 ataatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    ||||||||||||| ||||||||| ||| || ||||||||||| |||||||||    
T  20293046 ataatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 20019761 - 20019865
Alignment:
Q  177 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacaca 276  Q
    ||||| |||||| ||||||||||| ||||||| | ||| || ||||||||| ||||||||||||| |||   ||| ||||||||  |||| || ||||||    
T  20019761 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacaca 20019860  T
Q  277 cccaa 281  Q
    |||||    
T  20019861 cccaa 20019865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 22672114 - 22672175
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaac 236  Q
    |||||||||||||| ||||||||||| || || ||||||| || ||||||||| ||||||||    
T  22672114 taagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 89192 - 89142
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatca 240  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||| ||||    
T  89192 aatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 1078147 - 1078211
Alignment:
Q  175 taagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    ||||||| | |||| ||||||||||| |||||| |||||| ||  ||||||||||||||||||||    
T  1078147 taagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 27755772 - 27755733
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataa 229  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  27755772 aatttagtctatgactctttatttctatattccttcataa 27755733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 39299026 - 39298976
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatca 240  Q
    ||||||||||| ||||||||||||| |  |||||||| |||||||||||||    
T  39299026 aatttagtccaggactctttatttccacattccttcaaaacccaaacatca 39298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 36577415 - 36577366
Alignment:
Q  190 aatttagtccatgactctttatttctatgttccttcataacccaaacatc 239  Q
    |||||| |||| ||||||||||||| || ||||||||||| |||||||||    
T  36577415 aatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 20538080 - 20537980
Alignment:
Q  177 agaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacaca 276  Q
    ||||| |||||| ||||||||||| || |||| | ||| || ||| ||||| ||||| | |||||||||   ||| |||||||||||||| || ||||||    
T  20538080 agaaacagtgaacaatttagtccaagattcttaaattccatattcattcatgacccatatatcatgacccgaaattatgcacaaacaatctcttaacaca 20537981  T
Q  277 c 277  Q
    |    
T  20537980 c 20537980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 370773 - 370833
Alignment:
Q  176 aagaaatagtgaataatttagtccatgactctttatttctatgttccttcataacccaaac 236  Q
    |||||||| |||| ||||||||||| || |||||||||| ||  | |||||||||||||||    
T  370773 aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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