View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895_low_11 (Length: 257)
Name: NF4895_low_11
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_low_11 |
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| [»] scaffold0147 (3 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 7780 - 7590
Alignment:
| Q |
55 |
aaagtcccccctctcatatttagccccttttgcaatagaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatat |
154 |
Q |
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| T |
7780 |
aaagtcccccctctcatatttagccccttttgcaatagaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatat |
7681 |
T |
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| Q |
155 |
gatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
245 |
Q |
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| T |
7680 |
gatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
7590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 13327 - 13174
Alignment:
| Q |
92 |
gaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatc |
191 |
Q |
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| T |
13327 |
gaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacata |
13228 |
T |
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| Q |
192 |
gaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
245 |
Q |
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| T |
13227 |
gaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
13174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7829 - 7794
Alignment:
| Q |
1 |
ttaacttttaaagtgtagcgattttgacctcctatt |
36 |
Q |
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| T |
7829 |
ttaactttcaaagtgtagcgattttgacctcctatt |
7794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 43879078 - 43879189
Alignment:
| Q |
134 |
gaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatcgaagaagcacttcactactattctcgccttaaaagtccggtt |
233 |
Q |
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| T |
43879078 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcgtctcaagagtcctatt |
43879177 |
T |
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| Q |
234 |
tatctagatatt |
245 |
Q |
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||| |||||||| |
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| T |
43879178 |
tatttagatatt |
43879189 |
T |
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