View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895_low_14 (Length: 239)
Name: NF4895_low_14
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_low_14 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 968270 - 968475
Alignment:
| Q |
34 |
cccctcttgaaaggccaaaaagtctttgtcatgttctgggaatgtatggtttcggctatgatgtggataataagaattacaaggttgtggttgtttcaca |
133 |
Q |
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| T |
968270 |
ccccccttgagaggccacaaagtctttgtcatgttctgggaatgtatggtttcggctatgatgtggataataagaattacaaggttgtggttgtttcaca |
968369 |
T |
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| Q |
134 |
tctacgcgatagtagtggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaagttcccttcttat |
233 |
Q |
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| T |
968370 |
tctacgcgatagtagtggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcagaagttccctttttat |
968469 |
T |
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| Q |
234 |
tgtggt |
239 |
Q |
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|||||| |
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| T |
968470 |
tgtggt |
968475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 1931512 - 1931435
Alignment:
| Q |
149 |
tggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaagttccc |
226 |
Q |
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| T |
1931512 |
tggtaattttgttgacaaccatgaagtgaaggttcatactttggacaccaattcttggaaaagcattcaaaaattccc |
1931435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 1940898 - 1940849
Alignment:
| Q |
179 |
ggttcatactttgggcaccaatgcttgggaaagcattcaaaagttccctt |
228 |
Q |
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| T |
1940898 |
ggttcatactttgggcaccaatgtttggaaaagcattcagaagttccctt |
1940849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 1937338 - 1937267
Alignment:
| Q |
149 |
tggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaa |
220 |
Q |
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| T |
1937338 |
tggtaattttgttgacaaccatgaagtgaaggttcatactttgggcaccaattgttggaaaagcattcaaaa |
1937267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 1891387 - 1891339
Alignment:
| Q |
172 |
aagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaa |
220 |
Q |
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| T |
1891387 |
aagtgaaggttcatactttgggcaccaattcttggaaaaccattcaaaa |
1891339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 1007161 - 1007242
Alignment:
| Q |
147 |
agtggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaagttccctt |
228 |
Q |
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| T |
1007161 |
agtggtaattttgttaagaaagatgaagtgaaggttcatactttgggtgccaattcatggaaaagaattccaatgttccctt |
1007242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 1022189 - 1022270
Alignment:
| Q |
147 |
agtggtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcattcaaaagttccctt |
228 |
Q |
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| T |
1022189 |
agtggtaattttgttaagaaagatgaagtgaaggttcatactttgggtgccaattcatggaaaagaattccaatgttccctt |
1022270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 989103 - 989167
Alignment:
| Q |
151 |
gtaattttgttgaaaaagacaaagtgatggttcatactttgggcaccaatgcttgggaaagcatt |
215 |
Q |
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| T |
989103 |
gtaattttgttgacaaatataaagtgaaggttcatactttgggtactagttcttgggaaaacatt |
989167 |
T |
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