View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4895_low_3 (Length: 452)

Name: NF4895_low_3
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4895_low_3
NF4895_low_3
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-437)||(170766-171155)
[»] chr4 (5 HSPs)
chr4 (295-439)||(16595268-16595411)
chr4 (359-439)||(7216590-7216670)
chr4 (359-439)||(33722270-33722350)
chr4 (359-439)||(55081064-55081144)
chr4 (359-439)||(39991289-39991369)
[»] chr2 (1 HSPs)
chr2 (296-439)||(14105236-14105379)
[»] chr8 (4 HSPs)
chr8 (295-439)||(19954925-19955068)
chr8 (296-439)||(19950471-19950614)
chr8 (296-439)||(2470629-2470771)
chr8 (359-439)||(7146468-7146550)
[»] chr1 (7 HSPs)
chr1 (296-439)||(24159115-24159257)
chr1 (296-412)||(25659579-25659694)
chr1 (359-439)||(36725360-36725440)
chr1 (296-439)||(2493121-2493264)
chr1 (363-439)||(23191388-23191464)
chr1 (387-439)||(12906794-12906846)
chr1 (359-439)||(33380291-33380371)
[»] chr3 (4 HSPs)
chr3 (296-437)||(48431605-48431743)
chr3 (359-439)||(48435250-48435329)
chr3 (359-442)||(4662814-4662897)
chr3 (364-439)||(16983614-16983689)
[»] chr6 (7 HSPs)
chr6 (295-439)||(35130278-35130420)
chr6 (181-258)||(31045713-31045790)
chr6 (296-439)||(32814370-32814513)
chr6 (42-158)||(31045823-31045947)
chr6 (356-439)||(14776195-14776278)
chr6 (107-154)||(31080494-31080541)
chr6 (107-163)||(31069843-31069899)
[»] chr5 (1 HSPs)
chr5 (359-439)||(15591245-15591325)
[»] chr7 (1 HSPs)
chr7 (359-439)||(6897764-6897844)


Alignment Details
Target: scaffold0018 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 170766 - 171155
Alignment:
Q  20 atgtgggacttgttattaagcctgaagagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaaggaattccaaatcca 119  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170766 atgtgggacttgttattatgcccgaagagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaaggaattccaaatcca 170865  T
Q  120 acaagctgcagaaaggtttatctctctcgcacacatttatttcatacactttgaccatttgggtgatggagtgagttgtgtgggcattccgtaaagtgat 219  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  170866 acaagctgcagaaaggtttatctctctcgcacatatttatttcatacactttgaccatttgggtgatggagtgagttgtgtgggcatttcgtaaagtaat 170965  T
Q  220 taacaatgccatcacactaaaaactagatacttatatattccacgatgcaaatttaaacaattcctatgaagtctctgttggaacactatgagtcttaat 319  Q
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||    
T  170966 ---------catcacactaaaaactagatacttatatattccacgatgcaaatttaaacaattcctatgaagtcgctgttggaacactacgagtgttaat 171056  T
Q  320 ttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagcc 419  Q
    ||||||||                |||  |   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  171057 ttgtgaat----------------taaaaa---aatttaagagctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagcc 171137  T

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Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 295 - 439
Target Start/End: Original strand, 16595268 - 16595411
Alignment:
Q  295 ctgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    ||||||||||||||||||| ||||||||||||||       | |||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  16595268 ctgttggaacactatgagtgttaatttgtgaattaaaaaattctcatgtcaactatcctattga-gtgctcatttatgaggagaaatcatgtcattgatt 16595366  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  16595367 ttgtagaggtcaactaatcctagccattggatttgtaacttatct 16595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 7216590 - 7216670
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  7216590 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaactaatcttagccattgaatttgtaactcatct 7216670  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 33722270 - 33722350
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||| | || |||| |||||||||||| ||  |||||||||||| |||||||| ||||||||||| ||||    
T  33722270 agtgctcatttatgatgcgagatcaagtcattgattttctaacggtcaattaatcatagccattagatttgtaacttatct 33722350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 55081064 - 55081144
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||||| || || | | |||||||||| ||  ||||| ||||||||||||||||||||||||||| ||||    
T  55081064 agtgctcatttatgaggtgagataaagccattgattttctaacggtcatttaatcctagccattggatttgtaacttatct 55081144  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 39991289 - 39991369
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||||  || ||||  || |||||||||||  |||||| | ||| ||||||||| |||||||||| ||||    
T  39991289 agtgctcatttatgagacgagatcagatcgttgattttgtaacggtcaaatgatcatagccattgaatttgtaacttatct 39991369  T

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Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 296 - 439
Target Start/End: Complemental strand, 14105379 - 14105236
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntt-tcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    |||||||||||||||||| ||||||||||||||       || |||||| |||||||| ||| | |||||||||| ||||||||||||||||||||||||    
T  14105379 tgttggaacactatgagtgttaatttgtgaattaaaaaatttctcatgtcaactatcccattga-gtgctcatttctgaggagaaatcatgtcattgatt 14105281  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  14105280 ttgtagaggtcaactaatcctagccattggatttgtaactcatct 14105236  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 19955068 - 19954925
Alignment:
Q  295 ctgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    |||||||||||||||||||  |||||||||||||       | |||||| |||||||| ||| | ||||||||||||||||| |||||||||||||||||    
T  19955068 ctgttggaacactatgagtgctaatttgtgaattaaaaaattctcatgtcaactatcctattga-gtgctcatttatgaggataaatcatgtcattgatt 19954970  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  19954969 ttgtagaggtcaactaatcctagccaatggatttgtaactcatct 19954925  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 296 - 439
Target Start/End: Complemental strand, 19950614 - 19950471
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntt-tcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    |||||||||||||||||| ||||||||||||||       || |||| | |||||||  ||| | |||||||||||||||||||||||||||||||||||    
T  19950614 tgttggaacactatgagtgttaatttgtgaattaaaaaaattctcatatcaactatcttattga-gtgctcatttatgaggagaaatcatgtcattgatt 19950516  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  19950515 ttgtagaggtcaactaatcatagccattggatttgtaactcatct 19950471  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 296 - 439
Target Start/End: Complemental strand, 2470771 - 2470629
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgattt 395  Q
    |||||||||||||||||| ||||||||||||||       | |||||| |||||||  ||| | ||| ||||||||||||||||||  ||||||||||||    
T  2470771 tgttggaacactatgagtgttaatttgtgaattaaaaaattctcatgtcaactatcacattga-gtgttcatttatgaggagaaattttgtcattgattt 2470673  T
Q  396 tgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  2470672 tgtagaggtcagctaatcctagccattggatttgtaactcatct 2470629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 7146550 - 7146468
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcc--tagccattggatttgtaactcatct 439  Q
    ||||||| ||||||||| || |||| | |||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||    
T  7146550 agtgctcgtttatgaggcgagatcacgacattgattttgtagtggtcaattaatcctatagtcattggatttgtaacttatct 7146468  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 24159115 - 24159257
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgattt 395  Q
    |||||||||||||||||| ||||||||||||||        ||||||| |||| ||| ||| | |||||||||||| ||||||||| |||||||||||||    
T  24159115 tgttggaacactatgagtgttaatttgtgaattaaaaaatcttcatgtcaactgtcccattga-gtgctcatttataaggagaaattatgtcattgattt 24159213  T
Q  396 tgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||||||||||| |||||||||||||||||||| ||||||||||    
T  24159214 tgtagaggtcaactaatcctagccattggatttataactcatct 24159257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 412
Target Start/End: Original strand, 25659579 - 25659694
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgattt 395  Q
    |||||||||||||||||| ||||||||||||||       | |||||| |||||||  ||| | |||||||||||| |||||| ||||||||||||||||    
T  25659579 tgttggaacactatgagtgttaatttgtgaattaaaaaattctcatgtcaactatctcattga-gtgctcatttattaggagagatcatgtcattgattt 25659677  T
Q  396 tgtagaggtcaattaat 412  Q
    ||||| |||||| ||||    
T  25659678 tgtagcggtcaactaat 25659694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 36725440 - 36725360
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||| | || |||| | |||||||||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  36725440 agtgctcatttatgatgcgagatcaagccattgattttctaacggtcaattaatcctagccattggatttgtaacttatct 36725360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 2493121 - 2493264
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntt-tcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    ||||||||||||||| || ||||| ||||||||       || |||||| ||||||||  ||| |||||||||||||||||  | |||||||||||||||    
T  2493121 tgttggaacactatgggtgttaatatgtgaattaaaaaaattctcatgtcaactatccc-tttgagtgctcatttatgaggcaatatcatgtcattgatt 2493219  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||| | || ||| |||||||| |||||| |||||||||| ||||    
T  2493220 ttgtggtggccaactaatcctaaccattgaatttgtaacttatct 2493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 439
Target Start/End: Original strand, 23191388 - 23191464
Alignment:
Q  363 ctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||| |  | ||||||||||||||||||| | |||||| |||||||| ||||||||||||||||| ||||    
T  23191388 ctcatttatgaagcaatatcatgtcattgattttgtggtggtcaactaatcctaaccattggatttgtaacttatct 23191464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 12906846 - 12906794
Alignment:
Q  387 cattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||||||||| ||  |||||| |||||||| ||||||||||||||||| ||||    
T  12906846 cattgattttctaacggtcaactaatcctaaccattggatttgtaacttatct 12906794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 33380291 - 33380371
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||| | || |||| | |||||||||| ||  ||| || ||||||||| ||||| |||||||||| ||||    
T  33380291 agtgctcatttatgatgtgagatcaagccattgattttctaacggtgaactaatcctagtcattgaatttgtaacttatct 33380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 437
Target Start/End: Original strand, 48431605 - 48431743
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgattt 395  Q
    |||||||||||||||||| ||||||||||||||       | |||||| |||||||  ||| | ||||||||||||||| |||||||||||||||||||     
T  48431605 tgttggaacactatgagtgttaatttgtgaattaaaaaattctcatgtcaactatctcattga-gtgctcatttatgagaagaaatcatgtcattgatt- 48431702  T
Q  396 tgtagaggtcaattaatcctagccattggatttgtaactcat 437  Q
     ||||| ||||| |||||||||||||||||||||||||||||    
T  48431703 -gtagatgtcaactaatcctagccattggatttgtaactcat 48431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 48435250 - 48435329
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  48435250 agtgctcatttatgaggagaaatcatgtcattgattt-gtagatgtcaactaatcctagccattggatttgtaactcatct 48435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 4662897 - 4662814
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatctctg 442  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||    
T  4662897 agtgctcatttatgaggagaaattatgtcattgattttgtagcggtcaactaatcctaggcattggatttgtaacttatctctg 4662814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 439
Target Start/End: Complemental strand, 16983689 - 16983614
Alignment:
Q  364 tcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||||||||||| || |||| | |||||||||| ||  |||||| ||||| ||| |||||||||||||| ||||||    
T  16983689 tcatttatgaggcgagatcaagccattgattttttaacggtcaactaatcatagtcattggatttgtaattcatct 16983614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 295 - 439
Target Start/End: Complemental strand, 35130420 - 35130278
Alignment:
Q  295 ctgttggaacactatgagtcttaatttgtgaattnnnnnnntttcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    ||||||||||| ||||||| ||||||||||||||       | ||| || |||||||  ||| | ||||||||||||||||||||||||||||||||| |    
T  35130420 ctgttggaacattatgagtgttaatttgtgaattacaaaattctcacgtcaactatctcattga-gtgctcatttatgaggagaaatcatgtcattga-t 35130323  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||    
T  35130322 ttgtagatgtcaactaatcctagtcattggatttgtaactcatct 35130278  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 31045790 - 31045713
Alignment:
Q  181 ggtgatggagtgagttgtgtgggcattccgtaaagtgattaacaatgccatcacactaaaaactagatacttatatat 258  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  31045790 ggtgatagagtgagttgtgtgggcatttggtaaagtgattaacaatgccatcacactaaaaattagatactcatatat 31045713  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 439
Target Start/End: Original strand, 32814370 - 32814513
Alignment:
Q  296 tgttggaacactatgagtcttaatttgtgaattnnnnnnntt-tcatgttaactatccaatttaagtgctcatttatgaggagaaatcatgtcattgatt 394  Q
    |||||||||||||||||| ||||| ||||||||       || |||||| || ||||| ||| || |||| ||||||||||| | |||||||||||||||    
T  32814370 tgttggaacactatgagtgttaatatgtgaattaaaaaaattatcatgtcaattatcccattgaa-tgcttatttatgaggaaatatcatgtcattgatt 32814468  T
Q  395 ttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||| | |||||| |||||||||||| ||||||||||||| ||||    
T  32814469 ttgtggtggtcaactaatcctagccaatggatttgtaacttatct 32814513  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 31045947 - 31045823
Alignment:
Q  42 tgaagagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaaggaa------------ttccaaatccaacaagctgca 129  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    |||||||||||| ||||||||            |||||||||||||||| ||||    
T  31045947 tgaagagaaaaacgaaagtttcatgtgaaggttacaagagaa----aagcttcaatatataaaggaaatactaatccaattccaaatccaacaagttgca 31045852  T
Q  130 gaaaggtttatctctctcgcacacattta 158  Q
    | |||||||||||||||| ||||||||||    
T  31045851 ggaaggtttatctctctctcacacattta 31045823  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 439
Target Start/End: Complemental strand, 14776278 - 14776195
Alignment:
Q  356 ttaagtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    |||||||||||||||||||| || ||||||| ||| |||||   | |||||| |||||||| ||||||||||||||||| ||||    
T  14776278 ttaagtgctcatttatgaggcgagatcatgttattaattttccggcggtcaactaatcctaaccattggatttgtaacttatct 14776195  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 31080541 - 31080494
Alignment:
Q  107 aattccaaatccaacaagctgcagaaaggtttatctctctcgcacaca 154  Q
    ||||||||||||||||||||| |  |||||||||||||||| ||||||    
T  31080541 aattccaaatccaacaagctgtacgaaggtttatctctctcacacaca 31080494  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 31069899 - 31069843
Alignment:
Q  107 aattccaaatccaacaagctgcagaaaggtttatctctctcgcacacatttatttca 163  Q
    |||||||||||||||||| | ||| ||||| |||||||| | |||||||| ||||||    
T  31069899 aattccaaatccaacaagtttcaggaaggtctatctctcacacacacattaatttca 31069843  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 15591325 - 15591245
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||||| || |||||||||||||| |||||| | |||| ||||||||  |||||||||||||||| ||||    
T  15591325 agtgctcatttatgaggcgagatcatgtcattgatattgtagcgatcaactaatcctaatcattggatttgtaacttatct 15591245  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 6897764 - 6897844
Alignment:
Q  359 agtgctcatttatgaggagaaatcatgtcattgattttgtagaggtcaattaatcctagccattggatttgtaactcatct 439  Q
    ||||||||||||||| | || || | |||||||||||| ||  |||||| ||||| ||| ||||| |||||||||| ||||    
T  6897764 agtgctcatttatgatgtgagattaagtcattgattttctaacggtcaactaatcatagtcattgaatttgtaacttatct 6897844  T

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