View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4895_low_4 (Length: 438)
Name: NF4895_low_4
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 37183819 - 37183408
Alignment:
| Q |
12 |
atgaagatggtgatgaggttgattcaaatgtacaaagccggcctgaggatacgatcaatggataccaagtgaaaccggaatttatgccgatgttaagaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183819 |
atgaagatggtgatgaggttgattcaaatgtacgaagccggcctgaggatacgattaatggataccaagtgaaaccggaatttatgccgatgttaagaaa |
37183720 |
T |
|
| Q |
112 |
aattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaattatatcagat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37183719 |
aattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtggaattatatcagat |
37183620 |
T |
|
| Q |
212 |
ttggacgaaaagaatgttaaaaacaccagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183619 |
ttggacgaaaagaatgttaaaaacaccagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggc |
37183520 |
T |
|
| Q |
312 |
ttcgcacaaggctagttgaggcacttgacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaaga |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37183519 |
ttcgcacaaggctagttgaggcacttgacgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacaggaagctcattgaaga |
37183420 |
T |
|
| Q |
412 |
cgctgaaagtga |
423 |
Q |
| |
|
|| ||||||||| |
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|
| T |
37183419 |
cgttgaaagtga |
37183408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 37194951 - 37194540
Alignment:
| Q |
12 |
atgaagatggtgatgaggttgattcaaatgtacaaagccggcctgaggatacgatcaatggataccaagtgaaaccggaatttatgccgatgttaagaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194951 |
atgaagatggtgatgaggttgattcaaatgtacgaagccggcctgaggatacgattaatggataccaagtgaaaccggaatttatgccgatgttaagaaa |
37194852 |
T |
|
| Q |
112 |
aattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaattatatcagat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37194851 |
aattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtggaattatatcagat |
37194752 |
T |
|
| Q |
212 |
ttggacgaaaagaatgttaaaaacaccagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37194751 |
ttggacgaaaagaatgttaaaaacaccagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggc |
37194652 |
T |
|
| Q |
312 |
ttcgcacaaggctagttgaggcacttgacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaaga |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37194651 |
ttcgcacaaggctagttgaggcacttgacgcaagggagattatgaagaagtttgttatgctaaaagagaaaacagacgataacaggaagctcattgaaga |
37194552 |
T |
|
| Q |
412 |
cgctgaaagtga |
423 |
Q |
| |
|
|| ||||||||| |
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|
| T |
37194551 |
cgttgaaagtga |
37194540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 361
Target Start/End: Complemental strand, 37212252 - 37211913
Alignment:
| Q |
22 |
tgatgaggttgattcaaatgtacaaagccggcctgaggatacgatcaatggataccaagtgaaaccggaatttatgccgatgttaagaaaaattatcggt |
121 |
Q |
| |
|
||||||||||||||| | | ||||||| ||||||||| | | | ||| ||| |||||||| || ||||||||| |||| ||||||||||||||||| |
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|
| T |
37212252 |
tgatgaggttgattctgaaatgcaaagccagcctgaggacatggttaatatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggc |
37212153 |
T |
|
| Q |
122 |
aagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaattatatcagatttggacgaaa |
221 |
Q |
| |
|
|| |||||||||||| | |||||||| || ||||||| || ||||| ||||||| || ||||| | |||||||| ||| ||||||||||||||| ||| |
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|
| T |
37212152 |
aaacatggagatattaccaagaattgtgtgacaaagtcggtgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaaaa |
37212053 |
T |
|
| Q |
222 |
agaatgttaaaaacaccagagaagaagtcctgaaaaccaagattgatcaggttgatgaaataaaaagcatgaaagtggaggttgaatggcttcgcacaag |
321 |
Q |
| |
|
|| || || |||| || || | | | |||||||| ||||| | | | ||| |||| ||||||| |||||||||| ||||| ||||||| ||| || |
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|
| T |
37212052 |
aggatattgctaacatcaaaggaaatgacctgaaaattaagatcggtgacgttaatgacataaaaaatctgaaagtggaagttgagtggcttcacaccag |
37211953 |
T |
|
| Q |
322 |
gctagttgaggcacttgacgcaaggcagattatgaagaag |
361 |
Q |
| |
|
|||| |||| |||||| |||||||||||| | |||||| |
|
|
| T |
37211952 |
gctaactgagatacttgaggcaaggcagattcttaagaag |
37211913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 37202856 - 37202695
Alignment:
| Q |
46 |
aagccggcctgaggatacgatcaatggataccaagtgaaaccggaatttatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaat |
145 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||| | |||||| ||||| || ||| |||||| ||| | ||||| |||||||||||||| ||| |
|
|
| T |
37202856 |
aagccggcctgaggaaacgattaatggatatcaagtgaagcaggaattcatgcccatattagcaaaaataatcagcaagcacggagatattgctaataat |
37202757 |
T |
|
| Q |
146 |
tgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaattatatc |
207 |
Q |
| |
|
|| ||| ||||||| || ||| |||||||| |||||||||||| || |||||||| ||||| |
|
|
| T |
37202756 |
tgtttgacaaagtcagtgaaaggccgttcagcgttgttggagataatttgtggaatcatatc |
37202695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 411
Target Start/End: Complemental strand, 37202612 - 37202491
Alignment:
| Q |
290 |
atgaaagtggaggttgaatggcttcgcacaaggctagttgaggcacttgacgcaaggcagattatgaagaagtttgttatgctaaaagagaaaacagaca |
389 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||| |||||| || ||| |||||| | ||| | ||||| | || |||| |||||||||||||| | |
|
|
| T |
37202612 |
atgaaagtggaggtggattggcttcacatgaggctaattgaggtacgtgaggcaagggatattcttaagaaatctgcagtgctgaaagagaaaacagaga |
37202513 |
T |
|
| Q |
390 |
ataacaggaagctcattgaaga |
411 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
37202512 |
gtaataggaagctcattgaaga |
37202491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 37180684 - 37180587
Alignment:
| Q |
104 |
ttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaatt |
202 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||| || || ||||||| || ||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
37180684 |
ttaagaaaaattatcagcaagcatggagatatagctaagaa-tgtgtgacaaagtcggtgaaaaaccgttcgaaattgttggagatcatctgtggaatt |
37180587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 37180411 - 37180363
Alignment:
| Q |
375 |
aagagaaaacagacaataacaggaagctcattgaagacgctgaaagtga |
423 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
37180411 |
aagagaaaagagacaataatagcaagctcattgaagatgctgagagtga |
37180363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 7527817 - 7527711
Alignment:
| Q |
104 |
ttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatctgtggaatta |
203 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||| |||||| |||| ||||||| ||| |||||||| |||||||||| ||| | |
|
|
| T |
7527817 |
ttaagaaaagttatcggcaagcatggagatattgcgaagaattgcacttcaaagttggtaagattccgtgcagcgttgttgggaatgatctgtgaaatca |
7527718 |
T |
|
| Q |
204 |
tatcaga |
210 |
Q |
| |
|
| ||||| |
|
|
| T |
7527717 |
tttcaga |
7527711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 414034 - 414167
Alignment:
| Q |
94 |
tatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcagtgttgttggagatgatc |
193 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||||||||||||||| ||||| ||| | |||||| ||| || ||||||||| |||| |||||| || |
|
|
| T |
414034 |
tatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatt |
414133 |
T |
|
| Q |
194 |
tgtggaattatatcagatttggacgaaaagaatg |
227 |
Q |
| |
|
|||| ||| ||| |||| |||||| ||||||||| |
|
|
| T |
414134 |
tgtgaaatcatagcagagttggacaaaaagaatg |
414167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 5366808 - 5366948
Alignment:
| Q |
7 |
gagagatgaagatggtgatgaggttgattcaaatgtacaaagccggcctgaggatacgatcaatggataccaagtgaaaccggaatttatgccgatgtta |
106 |
Q |
| |
|
|||| |||| |||||||||| |||| |||| | |||||||||| |||||| || ||| | || ||||| ||||||| || ||||| ||||| || ||| |
|
|
| T |
5366808 |
gagaaatgatgatggtgatggggttcattcggaagtacaaagccagcctgaagacacggtttatcgatacgaagtgaagccagaattcatgcctatatta |
5366907 |
T |
|
| Q |
107 |
agaaaaattatcggtaagcatggagatattgctaagaattg |
147 |
Q |
| |
|
|||||||||| | | |||||| || ||||| |||||||||| |
|
|
| T |
5366908 |
agaaaaattaccagcaagcattgatatatttctaagaattg |
5366948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 5365154 - 5365232
Alignment:
| Q |
69 |
atggataccaagtgaaaccggaatttatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattg |
147 |
Q |
| |
|
||||||| ||||||| || ||||| ||||| || |||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
5365154 |
atggatataaagtgaagccagaattcatgcctatattaagaaaaattatcgacaagcatggatatatttctaagaattg |
5365232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 423
Target Start/End: Original strand, 5367153 - 5367226
Alignment:
| Q |
350 |
attatgaagaagtttgttatgctaaaagagaaaacagacaataacaggaagctcattgaagacgctgaaagtga |
423 |
Q |
| |
|
|||||| | ||||||| ||| ||| ||||||||| |||||||||||| |||||| ||||||| ||||| ||||| |
|
|
| T |
5367153 |
attatggataagtttgatattctagaagagaaaagagacaataacagcaagctctttgaagatgctgagagtga |
5367226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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