View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895_low_5 (Length: 317)
Name: NF4895_low_5
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 38 - 298
Target Start/End: Complemental strand, 10069415 - 10069155
Alignment:
| Q |
38 |
aaagaggcatgtgagtatctgcgttgcgtttagttaatcgtctcaaaaacaagaagaatgaaaccaccaaaacttatttcctctctcatcaacaagacaa |
137 |
Q |
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| T |
10069415 |
aaagaggcatgtgagtttctgcgttgcgttcagttaatcgtctcaaaaacaagaagaatgaaaccaccaaaacttatttcctctctcatcaacaagacaa |
10069316 |
T |
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| Q |
138 |
ttgtcatcatccttgaaatcctcgaaaacaataagttgaggcaggctggccatcagaaattaaataatcccaaaaatttgctttattttattttcatcct |
237 |
Q |
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| T |
10069315 |
ttgtcatcatccttgaaatcctcgaaaacaataagttgaggcaggctggccatcaaaaattaaataatcccaaaaatttgctttattttattttcatcct |
10069216 |
T |
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| Q |
238 |
ctattgcaactatataaagtcacatagacatacacttaatattcatccactacctatcctt |
298 |
Q |
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| T |
10069215 |
ctattgcaactatataaagtcgcatagacatacacttaatattcatccactacctatcctt |
10069155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 10106970 - 10106916
Alignment:
| Q |
244 |
caactatataaagtcacatagacatacacttaatattcatccactacctatcctt |
298 |
Q |
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| T |
10106970 |
caactatataaagtcacatagacatacacttaatattcatccactacctatcctt |
10106916 |
T |
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