View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895_low_6 (Length: 286)
Name: NF4895_low_6
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 34649346 - 34649551
Alignment:
| Q |
20 |
tcattttattttgatagttatatggctcat---ttcaaaatcaaaacatcgaatcacgatacaatgactcaaacaatttgacagttatatggttcatttt |
116 |
Q |
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| T |
34649346 |
tcattttattttgatagttatatggttcatcatttcaaaatcaaaacatcgaatcatgatacaatgactcaaacaatttgacagttatatggttcatttt |
34649445 |
T |
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| Q |
117 |
attttgatagagttgaagctcctaaacatctttcatttaattctacaaatggttctcatgttatgataactctatcattgaccgtcttcttatttaatgc |
216 |
Q |
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| T |
34649446 |
attttgatagagctgaagctcctaaacatctttcatttaattctacaaatggttctcatgttgtgataactctatcattgaccgtcttcttatttaatgc |
34649545 |
T |
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| Q |
217 |
taagaa |
222 |
Q |
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|||||| |
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| T |
34649546 |
taagaa |
34649551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 34649330 - 34649362
Alignment:
| Q |
94 |
ttgacagttatatggttcattttattttgatag |
126 |
Q |
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| T |
34649330 |
ttgacagttatatggttcattttattttgatag |
34649362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 34649575 - 34649610
Alignment:
| Q |
239 |
aaacaaaacagttcactagtttgaagaataggttca |
274 |
Q |
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| T |
34649575 |
aaacaaaacagttcactagtttgaagaataagttca |
34649610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 14489786 - 14489717
Alignment:
| Q |
106 |
tggttcattttattttgatagagttgaagctcctaaacatctttcatttaattctacaaatggttctcat |
175 |
Q |
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|||| |||||||||||||||||| ||||||||| || || ||||||| |||| |||||| |||||||||| |
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| T |
14489786 |
tggtgcattttattttgatagagctgaagctcccaagcacctttcatataatgctacaagtggttctcat |
14489717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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