View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4896-Insertion-1 (Length: 632)

Name: NF4896-Insertion-1
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4896-Insertion-1
NF4896-Insertion-1
[»] chr3 (2 HSPs)
chr3 (18-632)||(50591120-50591741)
chr3 (402-534)||(50590403-50590536)


Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 632
Target Start/End: Original strand, 50591120 - 50591741
Alignment:
Q  18 aatcatccttattgctatgttaggttaattgtttttgaaagcaacaaccaaagacatttagctggcaattttcgttaagagaatattaggcaccaaaact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50591120 aatcatccttattgctatgttaggttaattgtttttgaaagcaacaaccaaagacatttagttggcaattttcgttaagagaatattaggcaccaaaact 50591219  T
Q  118 caatccttttacggtttatctggttccattctgcacaacgttattagctaataaatgggtatatcaatatatcattgcaatattactttgcagagaagct 217  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50591220 caatcattttacggttta-ctggttccattctgcacaacgttattagctaataaatgggtatatcaatatatcattgcaatattactttgcggagaagct 50591318  T
Q  218 ttagtacatatttggtatcacaatgagtttatcgaaattatggtgaaggtttagcttttgcaaaatgacagtgtgattacggtaaacccaccatgatacc 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||    
T  50591319 ttagtacatgtttggtatcacaatgagtttatcgaaattatggtgaaggtttatctttagcaaaatgacattgtgatttcggtaaacccaccatgatacc 50591418  T
Q  318 aaccacatttagttttattgaagtgaatatcaagtttccccaatttgtgctattttttgcttcaccatt----aggggacttcttagcataacagacgtg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  50591419 aaccacatttagttttattgaagtgaatatcaagtttccccaatttgtgctattttttgcttcaccattagggaggggacttcttagcataacagacgtg 50591518  T
Q  414 gaagaacttggggactggatgaaatcttgtttggagaatcacccattattgaactcttgactgagaaagaacttgaagcagatccggctgttaagcattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50591519 gaagaacttggggactggatgaaatcttgtttggagaatcacccattattgaacttttgactgagaaagaacttgaagcagatccggctgttaagcattt 50591618  T
Q  514 aagctctgctactgaagaagggaaagtga-----tgacctgtagtgttgattctcactcttannnnnnnnnagttgaataaaaatgtaatttgttgatat 608  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||         | |||||| ||||||||||||||||||||    
T  50591619 aagctctgctactgaagaagggaaagtgatgacctgacctgtagtgttgattctcactcttatttttttttaattgaat-aaaatgtaatttgttgatat 50591717  T
Q  609 tttccattgggtgattgtatgtct 632  Q
    ||||||||| ||||||||||||||    
T  50591718 tttccattgcgtgattgtatgtct 50591741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 402 - 534
Target Start/End: Original strand, 50590403 - 50590536
Alignment:
Q  402 ataacagacgtggaagaacttggggactggatgaaatcttgtttggagaatcacccattatt-gaactcttgactgagaaagaacttgaagcagatccgg 500  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||||||||||||||||||||    
T  50590403 ataacagatgtggaagaacttggggactggatgaaatcttgtttggagaatcacccattgtttgaacctttgactgagaaagaacttgaagcagatccgg 50590502  T
Q  501 ctgttaagcatttaagctctgctactgaagaagg 534  Q
    ||||||||| ||||||||||||||||||||||||    
T  50590503 ctgttaagcttttaagctctgctactgaagaagg 50590536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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