View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4896-Insertion-2 (Length: 548)
Name: NF4896-Insertion-2
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 3983396 - 3983781
Alignment:
| Q |
9 |
atagttcacaaataatgacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagtttacattgaagaaactacaatggcaaacaaaatt |
108 |
Q |
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| T |
3983396 |
atagttcacaaataaagacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagtttacattaaagaaactaaaatggcaaacaaaatt |
3983495 |
T |
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| Q |
109 |
gttgcattgttgttgttgttagtgtgccttgtaggtgttgaaagtgtgagctttgaagattgcatgaaatattgcaaccgtactatggtattatttcccc |
208 |
Q |
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| T |
3983496 |
gttgcattgt---tgttgttagtgtgccttgtaggtgttcaaagtgtgaactttgaagattgcatgatttattgcaaccgtactatgctattatttccca |
3983592 |
T |
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| Q |
209 |
aatcatttgcagaatcgatgtgcaaattgcgctgtgaaacaatcgggtggtcaaatgggtgggattgtaagtttcacgttatcattttgttatgctccat |
308 |
Q |
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| T |
3983593 |
aatcatttgcagaatcgatgtgcaaattgcgctgtgaaacaatcgggtggtcagatgggtgggattgtaagtttcacgttatcattttgttatgctccat |
3983692 |
T |
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| Q |
309 |
ttcttagaaaattgaatttagtgaagagtcannnnnnnngaagaaatgaaaatagaagtagaagattaaaagctgaagacaatgactctaaa |
400 |
Q |
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| T |
3983693 |
ttcttagaaaattgaatttagtgaagaggc---tttttttaagaaatgaaaatagaagtagaagattagaagctgaagacgatgactctaaa |
3983781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 3983801 - 3983846
Alignment:
| Q |
407 |
gatttagt-tttagatcttaacacctttttaatcaagtggtttgat |
451 |
Q |
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| T |
3983801 |
gatttagtctttagatcttaacacctttttaatcaagtgctttgat |
3983846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 796680 - 796741
Alignment:
| Q |
15 |
cacaaataatgacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagttt |
76 |
Q |
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| T |
796680 |
cacaaataattaccgggaaggaggaagattaatacaactaacaacaacaaagcaaagagttt |
796741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 742141 - 742074
Alignment:
| Q |
9 |
atagttcacaaataatgacggtgaaggaggaaaataaatacaactaacaacaacaaagcaaagagttt |
76 |
Q |
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| T |
742141 |
atagttgagaaataatcaccgggaaggtggaaaagaaatacaactaacaacaacaaagcaaagagttt |
742074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 742044 - 742000
Alignment:
| Q |
93 |
aatggcaaacaaaattgttgcattgttgttgttgttagtgtgccttgt |
140 |
Q |
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| T |
742044 |
aatgggaaacaaaattgttgcattgttgt---tgttagtgtgccttgt |
742000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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