View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4896-Insertion-3 (Length: 423)
Name: NF4896-Insertion-3
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 63 - 423
Target Start/End: Complemental strand, 43026048 - 43025701
Alignment:
| Q |
63 |
aggggagataaataagacaaagttgtaattgatatgatattcaacaacatatttattgtcaaaagataattctcggtttttatcaacagtttaatcatgt |
162 |
Q |
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| T |
43026048 |
aggggagataaataagacaaagttgtaattgatatgatattcaacaacatatttattgtcaaaagataattctcggtttttatcaacagtttaatcatgt |
43025949 |
T |
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| Q |
163 |
aggcacttacatcactcaataaaatatttgtgcttgcatatgccnnnnnnnnnnnnnnnnnnnnccttatgtctcaacaccgttaatttcaaatttaaga |
262 |
Q |
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| T |
43025948 |
aagcacttacatcactcaataaaatatttatgcttgcatatgccaaaaaaaaaaaa--------cattatgtctcaacacctttaatttcaaatttaaga |
43025857 |
T |
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| Q |
263 |
taaaaacgatggtttagaaaaaggctggtttctagttctagcatataaaaatagaaacataactgaattgagggttttgcagattggaagt-aattctga |
361 |
Q |
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| T |
43025856 |
taaaaacgatggtttagaaaaaggctggtttctagttctatcatataaaaatagaaacataactgaattgagggttttgcagattggaagtaaattctga |
43025757 |
T |
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| Q |
362 |
tttgtatatgaaacggttgctgctcctgctaggtcattcttcacgtttctgaagttccatgt |
423 |
Q |
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| T |
43025756 |
tttgtatatgaaacggttg------ctgctaggtcattcttcacgtttctaaagttccatgt |
43025701 |
T |
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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 22258054 - 22257972
Alignment:
| Q |
307 |
ataaaaatagaaacataactgaattgagggttttgcagattgga-------agtaattctgatttgtatatgaaacggttgct |
382 |
Q |
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| T |
22258054 |
ataaaaatagaaacataattgaattaagggttttgcagattggatgtaaattgtaattctgatttgtatatgaaacggttgct |
22257972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 30794115 - 30794036
Alignment:
| Q |
310 |
aaaatagaaacataactgaattgagggttttgcagattggaa-------gtaattctgatttgtatatgaaacggttgct |
382 |
Q |
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| T |
30794115 |
aaaatagaaacataattgaattaagggttttgcagattggaaataaattgtaattctgatttgtatataaaacggttgct |
30794036 |
T |
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