View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4896-Insertion-4 (Length: 369)
Name: NF4896-Insertion-4
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 7884030 - 7884412
Alignment:
| Q |
8 |
aacccatcaatgctcttggagctgccattgcaattcttggcaccttcatctattcacaggtgaattctcatttccttctaaattatgtacttgatcttta |
107 |
Q |
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| T |
7884030 |
aacccatcaatgctcttggagctgccattgcaattcttggcaccttcatctattcacaggtgaattctcatttccttcgaaattatgtacttgatcttta |
7884129 |
T |
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| Q |
108 |
tactttgggaatgttctattttat----------------aat-----gtttgatattgaaacattatgtgagggatgcaattaattaacacaatttctg |
186 |
Q |
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| T |
7884130 |
tactttgggaatgttctattttatgtgtgtgtgtgtgtctaatatcttgtttgatattgaaacattatgtgagggatgcaattaattaacacaatttctg |
7884229 |
T |
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| Q |
187 |
tgtattctttgaaagagcaggctaaacagaattaaggttgcggttttgaagctgttatcgaacacatgggaacgatgattcacggttggagctcttaggg |
286 |
Q |
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| T |
7884230 |
ttgattctttgaaagagcaggcaaaacagaattaaggttgcggttttgaagctgttatcgaacacatgggaacgatgattcacagttggagctctaaggg |
7884329 |
T |
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| Q |
287 |
tatactatgattaggaggactatgatgttaaatagagagtgtattatgatgtgaattagagtgtattatgttgtcaataggaa |
369 |
Q |
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| T |
7884330 |
tatactatgattaggaggactatgatcttaaatagagagtgtattatgatgtgaattagagtgtattatgttgtcaataggaa |
7884412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 54986714 - 54986785
Alignment:
| Q |
15 |
caatgctcttggagctgccattgcaattcttggcaccttcatctattcacaggtgaattctcatttccttcta |
87 |
Q |
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| T |
54986714 |
caatgcccttggtgctgcaattgcaatcctcggcaccttcctctattcacaggtgcattc-cttttccttcta |
54986785 |
T |
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