View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4896-Insertion-5 (Length: 338)
Name: NF4896-Insertion-5
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896-Insertion-5 |
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| [»] scaffold0568 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 1291 - 1622
Alignment:
| Q |
8 |
attttcaccaaaaccccaaattaaaaagagcataatttccccnnnnnnnnnn-cttccccaaatcaaaacttaaaactattttttctcttctttcgcata |
106 |
Q |
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| T |
1291 |
attttcaccaaaaccccaaattaaaaagagcataatttcccccttttttttttcttccccaaatcaaaacttaaaactattttttctcttctttcgcata |
1390 |
T |
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| Q |
107 |
ccgtcgacaatccactcctttagcgtttgattccagtgtcccagtttccccaatttatttaaggtttctgatcttgttcatttctcggtgatagtgacaa |
206 |
Q |
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| T |
1391 |
ccgccgacaatccactcctttagcgtttgattccagtgttccagtttccccaatttatttaaggtttcagatcttgttcatttctcggtgatagtgacga |
1490 |
T |
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| Q |
207 |
cgcggtcgttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgattt |
306 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1491 |
cgcggtcgtcgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccgcactttcacctttgattt |
1590 |
T |
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| Q |
307 |
cgttgttgatgtcgaaactagtcaggtatggt |
338 |
Q |
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| T |
1591 |
cgttgttgatgtcgaaactagtcaggtatggt |
1622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 7893 - 8224
Alignment:
| Q |
8 |
attttcaccaaaaccccaaattaaaaagagcataatttccccnnnnnnnnnn-cttccccaaatcaaaacttaaaactattttttctcttctttcgcata |
106 |
Q |
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| T |
7893 |
attttcaccaaaaccccaaattaaaaagagcataatttcccccttttttttttcttccccaaatcaaaacttaaaactattttttctcttctttcgcata |
7992 |
T |
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| Q |
107 |
ccgtcgacaatccactcctttagcgtttgattccagtgtcccagtttccccaatttatttaaggtttctgatcttgttcatttctcggtgatagtgacaa |
206 |
Q |
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| T |
7993 |
ccgccgacaatccactcctttagcgtttgattccagtgttccagtttccccaatttatttaaggtttcagatcttgttcatttctcggtgatagtgacga |
8092 |
T |
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| Q |
207 |
cgcggtcgttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgattt |
306 |
Q |
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| T |
8093 |
cgcggtcgtcgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccgcactttcacctttgattt |
8192 |
T |
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| Q |
307 |
cgttgttgatgtcgaaactagtcaggtatggt |
338 |
Q |
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| T |
8193 |
cgttgttgatgtcgaaactagtcaggtatggt |
8224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 17059378 - 17059707
Alignment:
| Q |
8 |
attttcaccaaaaccccaaattaaaaagagcataatttccccnnnnnnnnnncttccccaaatcaaaacttaaaactattttttctcttctttcgcatac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17059378 |
attttcaccaaaaccccaaattaaaaagagcataatttcccctttttttttctttccccaaatcaaaacttaaaactattttttctcttctttcgcatac |
17059477 |
T |
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| Q |
108 |
cgtcgacaatccactcctttagcgtttgattccagtgtcccagtttccccaatttatttaaggtttctgatcttgttcatttctcggtgatagtgacaac |
207 |
Q |
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| T |
17059478 |
cgccgacaatccactcctttagcgtttgattccagtgtcccagtttccccaatttatttaaggtttcagatcttgttcatttctcggtgata-tgcatag |
17059576 |
T |
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| Q |
208 |
gcggtcgttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttc |
307 |
Q |
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| T |
17059577 |
ggggtcgttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttc |
17059676 |
T |
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| Q |
308 |
gttgttgatgtcgaaactagtcaggtatggt |
338 |
Q |
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| T |
17059677 |
gttgttgatgtcgaaactagtcaggtatggt |
17059707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 5523820 - 5523897
Alignment:
| Q |
215 |
ttgtgccaagataagtacaagggagattctatagttcagatgattttcgatgattctttgtccattaatggccacact |
292 |
Q |
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| T |
5523820 |
ttgtgccaagataagtacaatggagattctatagttcagatgattttttatgattctttgtccattaatggccgcact |
5523897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 38289406 - 38289499
Alignment:
| Q |
243 |
ctatagttcagatgattttcgatgattctttgtccattaatggccacactttcacctttgatttcgttgttgatgtcgaaactagtcaggtatg |
336 |
Q |
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| T |
38289406 |
ctatagttcagaaaatttccggtgattctttatccattaatggccacacctttacgtttgattccgttgccgacgtcgaagctactcaggtatg |
38289499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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