View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4896-Insertion-7 (Length: 104)
Name: NF4896-Insertion-7
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896-Insertion-7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 97; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 2272686 - 2272782
Alignment:
| Q |
8 |
ttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272686 |
ttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggt |
2272782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 65
Target Start/End: Original strand, 5823676 - 5823703
Alignment:
| Q |
38 |
acaaagtgaatatatgttgatgttcata |
65 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5823676 |
acaaagtgaatatatgttgatgttcata |
5823703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University