View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4896_high_2 (Length: 336)
Name: NF4896_high_2
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 39837038 - 39837351
Alignment:
| Q |
20 |
gatccagttgaa-aggctccaagtttcttagatatatcctccatatatatgagtagatcaatgatagtggagagtactcaagcactaaaaagatgtcatt |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39837038 |
gatccagttgaagaggctccaagtttcttagatatatcctccacat----gagtagatcaatgatagtggagagtactcaagcactaaaaagatgtcatt |
39837133 |
T |
|
| Q |
119 |
ccaacttttgaatgtgaacacgcacactttaatccaaccactatgaaaatagcaattgtctttctattcatcttcttctagtcggcatcaaacttattat |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39837134 |
ccaacttttgaatgtgaacacacacactttaatccaatcactatgaaaacagcaattgtctttctattcatcttcttctaatcggcatcaaacttattat |
39837233 |
T |
|
| Q |
219 |
tgggtttaattgttccccctaaataagatcatacaagtgtttaacaagtcttccatgagatcagagtgtataattagtagaattgagcttaatcatattt |
318 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39837234 |
tgggtttagttgttccctctaaataagatcatacaagtatttaacaagtcttccatgagatcagagtgtataattagtagaattgagcttaatcatattt |
39837333 |
T |
|
| Q |
319 |
gtcctttgcttctcctct |
336 |
Q |
| |
|
|||| ||| || |||||| |
|
|
| T |
39837334 |
gtcccttgattttcctct |
39837351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University