View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4896_low_1 (Length: 507)

Name: NF4896_low_1
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4896_low_1
NF4896_low_1
[»] chr2 (3 HSPs)
chr2 (17-490)||(30783563-30784036)
chr2 (20-406)||(30247318-30247710)
chr2 (433-489)||(31548340-31548396)
[»] chr4 (3 HSPs)
chr4 (432-478)||(52430906-52430954)
chr4 (433-483)||(25221714-25221764)
chr4 (433-489)||(37997285-37997341)
[»] chr1 (3 HSPs)
chr1 (438-483)||(30570562-30570607)
chr1 (438-481)||(29721946-29721989)
chr1 (438-490)||(50873629-50873681)
[»] chr7 (3 HSPs)
chr7 (432-489)||(27568046-27568105)
chr7 (433-483)||(32525158-32525208)
chr7 (432-489)||(40417804-40417861)
[»] chr3 (1 HSPs)
chr3 (432-489)||(6178409-6178468)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Original strand, 30783563 - 30784036
Alignment:
Q  17 caagagcaccttatattaaagagagtttacagaatgatatgaatctgaggaatatcttttgtaacagtataaaaaagcgtgaagcatagtatatatttaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30783563 caagagcaccttatattaaagagagtttacagaatgatatgaatctgaggaatatcttttgtaacagtataaaaaagcgtgaagcatagtatatatttaa 30783662  T
Q  117 aggtaattttattccttgttttgttctcttgtattttctatttttatttacaaaattagcaatggttcatctttttaagtatttatgtctgtgcagagaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30783663 aggtaattttattccttgttttgttctcttgtattttctatttttatttacaaaattagcaatggttcatctttttaagtatttatgtctgtgcagagaa 30783762  T
Q  217 atcgtttgtaatgatcctttgtctcttgtaaatgtataggctggtcaattttattccacaggagaaaatattatctgttgcagctagtttgtttgctctt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30783763 atcgtttgtaatgatcctttgtctcttgtaaatgtataggctggtcaattttattccacaggagaaaatattatctgttgcagctagtttgtttgctctt 30783862  T
Q  317 gacatacatactacctgaagctttaaggtattgcttttccatcaaaagttttttattacgtttaaaacagtagggttaaattaagagtaaatgatatttg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30783863 gacatacatactacctgaagctttaaggtattgcttttccatcaaaagttttttattacgtttaaaacagtagggttaaattaagagtaaatgatatttg 30783962  T
Q  417 aacaactannnnnnngacaacttttatgacaattttatctcgtactcatattatgtttttactttctttctctg 490  Q
    ||||||||       ||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  30783963 aacaactatttttttgacaatttttatgataattttatctcgtactcacattatgtttttactttctatctctg 30784036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 30247318 - 30247710
Alignment:
Q  20 gagcaccttatattaaagagagtttacagaatgatatgaatctgaggaatatcttttgtaacagtataaaaaagcgtgaagcatagtatatatttaaagg 119  Q
    ||||||||||| ||||| ||||||||||||| ||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||| | |||||||||    
T  30247318 gagcaccttatgttaaaaagagtttacagaaggatatgactctgagggatatcttttttaacagtacaaaaaagcgtgaagcatagtaaagatttaaagg 30247417  T
Q  120 taattt-----tattccttgttttgttctcttgtattttctatttttatttacaaaattagcaatggttcatctttttaagtatttatgtctgtgcagag 214  Q
    ||||||     |||||||||||||||| ||| || ||||||||||||||||||||||| | ||||| || |||||||||| |||||||||||||||||||    
T  30247418 taattttattttattccttgttttgttgtctggttttttctatttttatttacaaaatgaacaatgatttatctttttaactatttatgtctgtgcagag 30247517  T
Q  215 aaatcgtttgtaatgatcctttgtctcttgtaaatgtataggctggtcaattttattccacaggagaaaatattatctgttgcagctagtttgtttgctc 314  Q
     ||| ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||| ||||||||||    
T  30247518 caattgtttgtaatgatcctttgtcttttgtaattgtataggctggtcaatttcattccaccggagaaaatattatctgttactgctag-ttgtttgctc 30247616  T
Q  315 ttgacatacatactacctgaagctttaaggtattgcttttccatc-aaaagttttttattac-gtttaaaacagtagggttaaattaagagtaa 406  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||  ||| | |||||||||||||||| |||||||    
T  30247617 ttgacatacatactacctgaagctttaaggcattgcttttccatcaaaaagtttttcattacatttttagacagtagggttaaattgagagtaa 30247710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 31548340 - 31548396
Alignment:
Q  433 acaacttttatgacaattttatctcgtactcatattatgtttttactttctttctct 489  Q
    ||||||||| |||||| ||| |||| || | |||||||||||||||||||| |||||    
T  31548340 acaacttttgtgacaactttctctcatatttatattatgtttttactttctctctct 31548396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 52430906 - 52430954
Alignment:
Q  432 gacaacttttatgacaattttatctc--gtactcatattatgtttttac 478  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  52430906 gacaacttttatgacaattttctctctcgtactcatattatgtttttac 52430954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 25221764 - 25221714
Alignment:
Q  433 acaacttttatgacaattttatctcgtactcatattatgtttttactttct 483  Q
    ||||||||| ||||||||||||||  || ||| ||||||||||||||||||    
T  25221764 acaacttttgtgacaattttatcttatattcacattatgtttttactttct 25221714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 37997285 - 37997341
Alignment:
Q  433 acaacttttatgacaattttatctcgtactcatattatgtttttactttctttctct 489  Q
    ||||||||| |||||| ||| |||| |||||| ||||| |||||||||||| |||||    
T  37997285 acaacttttgtgacaactttctctcatactcacattatctttttactttctctctct 37997341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 30570562 - 30570607
Alignment:
Q  438 ttttatgacaattttatctcgtactcatattatgtttttactttct 483  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||    
T  30570562 ttttgtgacaattttatctcatactcacattatgtttttactttct 30570607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 481
Target Start/End: Original strand, 29721946 - 29721989
Alignment:
Q  438 ttttatgacaattttatctcgtactcatattatgtttttacttt 481  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||    
T  29721946 ttttattacaattttatctcgtattcatattgtgtttttacttt 29721989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 50873681 - 50873629
Alignment:
Q  438 ttttatgacaattttatctcgtactcatattatgtttttactttctttctctg 490  Q
    |||| ||||||||||||||  || |||||||||| ||||||||| ||||||||    
T  50873681 ttttgtgacaattttatcttttattcatattatgattttactttttttctctg 50873629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 27568046 - 27568105
Alignment:
Q  432 gacaacttttatgacaattttat--ctcgtactcatattatgtttttactttctttctct 489  Q
    |||||||||| |||||| |||||  ||| ||||||||||||||||||||||||| |||||    
T  27568046 gacaacttttgtgacaactttatttctcatactcatattatgtttttactttctctctct 27568105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 32525158 - 32525208
Alignment:
Q  433 acaacttttatgacaattttatctcgtactcatattatgtttttactttct 483  Q
    |||||||||||||||| ||| ||||  ||| ||||||||||||||||||||    
T  32525158 acaacttttatgacaactttctctctcacttatattatgtttttactttct 32525208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 40417804 - 40417861
Alignment:
Q  432 gacaacttttatgacaattttatctcgtactcatattatgtttttactttctttctct 489  Q
    ||||| |||| |||||| ||| |||  |||||| ||||||||||||||||||||||||    
T  40417804 gacaatttttgtgacaactttttctattactcacattatgtttttactttctttctct 40417861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 6178468 - 6178409
Alignment:
Q  432 gacaacttttatgacaattttatctcg--tactcatattatgtttttactttctttctct 489  Q
    |||||||||| |||||||||| ||||   |||||| |||||||||||||||||| |||||    
T  6178468 gacaacttttgtgacaattttctctctcatactcacattatgtttttactttctctctct 6178409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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