View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4896_low_5 (Length: 207)
Name: NF4896_low_5
Description: NF4896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4896_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 20338206 - 20338032
Alignment:
| Q |
15 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20338206 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
20338107 |
T |
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| Q |
115 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtt |
189 |
Q |
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| T |
20338106 |
gaatttcggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtt |
20338032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 20141610 - 20141782
Alignment:
| Q |
16 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaatg |
115 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||| ||| ||||||||||| ||| |
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| T |
20141610 |
agagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaggaagcaaggaaagcacatcggtgatttgctcgttagggatg |
20141709 |
T |
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| Q |
116 |
aattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgt |
188 |
Q |
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| T |
20141710 |
aattttggtggcatgatggtaggacgccgtgatggtgataggtgattcatgatgggatttttgttacaaatgt |
20141782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 20126929 - 20127104
Alignment:
| Q |
15 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
114 |
Q |
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| T |
20126929 |
cagagatgagagagtcaagtgacttactcaagcacctaaatcgaaggagagatttgacaagaagtaaagagagcaaatcggggatgtgctcgttaggaat |
20127028 |
T |
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| Q |
115 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgttgcaaatgttg |
190 |
Q |
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| T |
20127029 |
gaattttggtgacgtggtggtagaatgttgtgatggagaaagaggattcattatgggatttttgttacaaatgttg |
20127104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 20134107 - 20134272
Alignment:
| Q |
15 |
cagagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaaggagagcaaatcggggatgtgctcgttaggaat |
114 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||| | ||| ||||| | ||||||||| ||||||||| | |
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| T |
20134107 |
cagagatgagagagtcatgtggcttactcaagcacctaaatcgaagaagagatttgacgggaaggagggaaagcaagttggggatgtggtcgttaggatt |
20134206 |
T |
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| Q |
115 |
gaattttggtgacgtgatggtaggacgctgtgatggtgataggagactcatgatgggatttttgtt |
180 |
Q |
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| T |
20134207 |
gaattttggtgacatgttggtaggacgttgtgatggagataggagattcatgatgggatttttgtt |
20134272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 20375296 - 20375362
Alignment:
| Q |
17 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagg |
83 |
Q |
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| T |
20375296 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagg |
20375362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 20361999 - 20362066
Alignment:
| Q |
17 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
84 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
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| T |
20361999 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaaggagggatttgacgggaagcaagga |
20362066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 20351372 - 20351305
Alignment:
| Q |
17 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaagga |
84 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
20351372 |
gagatgagagagtcatgcaacttactcaagcacctaaatcgaaggagagatttgacgggaagcaagga |
20351305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 20407523 - 20407458
Alignment:
| Q |
16 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaagtaa |
81 |
Q |
| |
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||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||| |||||||| |
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| T |
20407523 |
agagatgagagagtcatatgacttacttaagcacctaaatcgaaggagtgatttgacgggaagtaa |
20407458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 20360451 - 20360396
Alignment:
| Q |
17 |
gagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgac |
72 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
20360451 |
gagatgagagagtcatgtgacttactcaagcacctaaatcgaagtagaaatttgac |
20360396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 20442199 - 20442137
Alignment:
| Q |
16 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttgacaggaag |
78 |
Q |
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||||||||||||||||| ||||||||| || |||||||||| || ||| |||||||| ||||| |
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| T |
20442199 |
agagatgagagagtcatatgacttacttaagcacctaaatcaaatgagtgatttgacgggaag |
20442137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 20139194 - 20139235
Alignment:
| Q |
31 |
atgtgacttactcaaacacctaaatcgaaggagagatttgac |
72 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
20139194 |
atgtgacttactcaagcacctaaatcaaaggagagatttgac |
20139235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 20423152 - 20423097
Alignment:
| Q |
16 |
agagatgagagagtcatgtgacttactcaaacacctaaatcgaaggagagatttga |
71 |
Q |
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||||||||||||||||| ||||||||| || ||||| |||||||||| ||||||| |
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| T |
20423152 |
agagatgagagagtcatatgacttacttaagcacctgaatcgaaggaatgatttga |
20423097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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