View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4897_high_2 (Length: 211)
Name: NF4897_high_2
Description: NF4897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4897_high_2 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 35374908 - 35374714
Alignment:
| Q |
17 |
aattatagagtgattgagatgacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaa |
116 |
Q |
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| T |
35374908 |
aattatagagtgattgagatgacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaa |
35374809 |
T |
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| Q |
117 |
caaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacaccatcacgtagagattcttcgtttgcatacttagcagt |
211 |
Q |
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| T |
35374808 |
caaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagt |
35374714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 35381150 - 35380971
Alignment:
| Q |
29 |
attgagatgacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagt |
128 |
Q |
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| T |
35381150 |
attgagaagacagctggagcgacatagaggacaattaggttgtttaggaagccaatcttgaatgcaacggagatggaaactctgggaacaaagagggagc |
35381051 |
T |
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| Q |
129 |
gtaccaatgtcattattgtcttcaaactcatccaagcaaataacaccatcacgtagagattcttcgtttgcatacttagc |
208 |
Q |
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| T |
35381050 |
gttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagc |
35380971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 35356921 - 35356797
Alignment:
| Q |
45 |
gagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattat |
144 |
Q |
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| T |
35356921 |
gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggagagtgcgaatgtaatcat |
35356822 |
T |
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| Q |
145 |
tgtcttcaaactcatccaagcaaat |
169 |
Q |
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||| |||||| ||| |||||||||| |
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| T |
35356821 |
tgttttcaaattcaaccaagcaaat |
35356797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 35351787 - 35351663
Alignment:
| Q |
45 |
gagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattat |
144 |
Q |
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| T |
35351787 |
gagcgacaaagaggacagctaggttgtttatgaagccaagcatcaatgcaagcgagatggaaaatgtgggaacaaagagggagggtgcgaatgtaatcat |
35351688 |
T |
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| Q |
145 |
tgtcttcaaactcatccaagcaaat |
169 |
Q |
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| T |
35351687 |
tgttttcaaattcaaccaagcaaat |
35351663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 35367939 - 35367815
Alignment:
| Q |
45 |
gagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattat |
144 |
Q |
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|||||||| ||||||||||| || ||||||||||||||| | ||||| || |||||||| || |||| |||||| || ||| ||||||| | || || |
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| T |
35367939 |
gagcgacacagaggacaattggggtttttacgaagccaaacctcaatacaatcgagatgaaatgtgtgataacaaatagagagggtaccaaggcgatcat |
35367840 |
T |
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| Q |
145 |
tgtcttcaaactcatccaagcaaat |
169 |
Q |
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| T |
35367839 |
tgtcttcaaattcatctaaacaaat |
35367815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 10696826 - 10696703
Alignment:
| Q |
45 |
gagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtaccaatgtcattat |
144 |
Q |
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|||||||| | |||||| ||||||| ||||| |||||| ||||||||||| |||||||||| |||||||||||||||| || || | |||| || || |
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| T |
10696826 |
gagcgacaaataggacagttaggttgtttactaagccatgcttcaatgcaaacgagatggaaagtgtgggaacaaagaggcagggtgcgaatgcgatcat |
10696727 |
T |
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| Q |
145 |
tgtcttcaaactcatccaagcaaa |
168 |
Q |
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| T |
10696726 |
tgtctttaaattcatccaaacaaa |
10696703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 47905986 - 47906074
Alignment:
| Q |
44 |
ggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtac |
132 |
Q |
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|||||||||||||||||| |||| ||| |||||||||| | |||||||| ||| |||| || ||||||| ||||||||||| |||| |
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| T |
47905986 |
ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtac |
47906074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 47908758 - 47908846
Alignment:
| Q |
44 |
ggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtac |
132 |
Q |
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| T |
47908758 |
ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtac |
47908846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30812105 - 30812002
Alignment:
| Q |
17 |
aattatagagtgattgagat-gacaactggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtggga |
115 |
Q |
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||||| ||||||||||||| |||| | |||||| | ||||| || ||||||||||||||||| |||||||||||||| | ||||||||| ||||||| |
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| T |
30812105 |
aattacagagtgattgagagagacatgttgagcgatagagagggcagttaggttttttacgaagtcaagcttcaatgcaattgagatggaaattgtggga |
30812006 |
T |
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| Q |
116 |
acaa |
119 |
Q |
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|||| |
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| T |
30812005 |
acaa |
30812002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 40735738 - 40735817
Alignment:
| Q |
45 |
gagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagg |
124 |
Q |
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| T |
40735738 |
gagcgacatagaggacagctaggttgtttagtgagccaagcgtcgatgcaaacgacatggaaactgtgggaacaaagagg |
40735817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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