View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4897_low_3 (Length: 239)

Name: NF4897_low_3
Description: NF4897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4897_low_3
NF4897_low_3
[»] chr4 (1 HSPs)
chr4 (19-222)||(13893606-13893809)
[»] chr1 (2 HSPs)
chr1 (19-222)||(44306148-44306350)
chr1 (19-171)||(22893821-22893974)
[»] chr2 (2 HSPs)
chr2 (19-222)||(6049931-6050126)
chr2 (23-213)||(26661530-26661720)
[»] scaffold0586 (1 HSPs)
scaffold0586 (19-171)||(9611-9760)
[»] chr8 (2 HSPs)
chr8 (19-171)||(32717779-32717928)
chr8 (19-171)||(10637666-10637815)
[»] chr6 (2 HSPs)
chr6 (19-171)||(19701178-19701332)
chr6 (50-213)||(21481475-21481638)
[»] chr7 (3 HSPs)
chr7 (19-194)||(33430156-33430336)
chr7 (19-125)||(13331531-13331637)
chr7 (19-125)||(13342446-13342552)
[»] chr5 (1 HSPs)
chr5 (19-125)||(5672002-5672108)
[»] chr3 (1 HSPs)
chr3 (18-125)||(15761973-15762080)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 13893809 - 13893606
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893809 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 13893710  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgagaaatttaacccacc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13893709 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctatcaactcatttttgttcctgttttgagaaatttaacccacc 13893610  T
Q  219 tttg 222  Q
    ||||    
T  13893609 tttg 13893606  T

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Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 44306148 - 44306350
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44306148 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttccattactcaacatagatttg 44306246  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgagaaatttaacccacc 218  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44306247 gtcattgatatcattatctcattattttttggtgtactgttgttgcttattgccttctctcaactcatttttgttccttttttgagaaatttaacccacc 44306346  T
Q  219 tttg 222  Q
    ||||    
T  44306347 tttg 44306350  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 22893821 - 22893974
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||    
T  22893821 tgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagatttg 22893920  T
Q  119 gtgattgatatca-ttatctcattattttttggtctactgttgttgcttattgc 171  Q
    |||||| |||||| || |||  || |||||| |||| ||| |||||||||||||    
T  22893921 gtgatttatatcatttctctgtttttttttttgtcttctgatgttgcttattgc 22893974  T

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Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 6049931 - 6050126
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049931 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 6050030  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgccttctctcaactcatttttgttcctgttttgagaaatttaacccacc 218  Q
    ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6050031 gtgattgata--------tcattattttttggtctactgttgttgcttattgccttctctcaactcatttgtgttcctgttttgagaaatttaacccacc 6050122  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 26661530 - 26661720
Alignment:
Q  23 catcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtga 122  Q
    |||||||||||||  | || |||| | |||||||||||||| ||||||||| |||| |||||| |   ||||||||||||||||||||||||||||||||    
T  26661530 catcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtga 26661629  T
Q  123 ttgatatcattatctcattattttttggtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgttt--tgagaaatttaac 213  Q
    ||||||||| | ||||  | |||||| |||| ||| |||||||||||||| || ||||||| ||||||||||| | |||  |||||||||||||    
T  26661630 ttgatatcaat-tctc--tgtttttttgtctgctgtttgttgcttattgctttgtctcaacccatttttgttcattttttatgagaaatttaac 26661720  T

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Target: scaffold0586 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 9611 - 9760
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  9611 tgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttg 9710  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 171  Q
    |||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  9711 gtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 9760  T

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Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 32717928 - 32717779
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| | |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  32717928 tgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttg 32717829  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 171  Q
    |||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  32717828 gtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 32717779  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 10637666 - 10637815
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| | |||  ||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||||    
T  10637666 tgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagatttg 10637765  T
Q  119 gtgattgatatcattatctcattattttttggtctactgttgttgcttattgc 171  Q
    |||||| |||||||| ||||  | |||||| |||| ||| |||||||||||||    
T  10637766 gtgatttatatcatt-tctc--tgtttttttgtcttctgatgttgcttattgc 10637815  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 19701178 - 19701332
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  19701178 tgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttg 19701277  T
Q  119 gtgattgatatcatta-tctcattattttttg-gtctactgttgttgcttattgc 171  Q
     ||||| ||||||||  ||| ||| ||||||  |||| ||| |||||||||||||    
T  19701278 ttgatttatatcatttctctgatttttttttttgtcttctgatgttgcttattgc 19701332  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 21481475 - 21481638
Alignment:
Q  50 gatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttggtgattgatatcattatctcattattttttg 149  Q
    |||||||||||||| ||||||||| |||| |||||| |   ||||||||||||||||||||||||||||||||||||||||| | ||||  | ||||||     
T  21481475 gatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaat-tctc--tgttttttt 21481571  T
Q  150 gtctactg-ttgttgcttattgccttctctcaactcatttttgttcctgttt--tgagaaatttaac 213  Q
    |||| ||| |||||||||||||| || ||||||| ||||||||||| | |||  |||||||||||||    
T  21481572 gtctgctgtttgttgcttattgctttgtctcaacccatttttgttcattttttatgagaaatttaac 21481638  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 33430336 - 33430156
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattc-ttccattactcaacatagattt 117  Q
    |||||||||| || ||| ||||| | || || |||||||| ||||||||||||||||||| ||||| ||||  | || |||||||||||||| |||||||    
T  33430336 tgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactcaacgtagattt 33430237  T
Q  118 ggtgattgatatcattatctcattattttttg----gtctactgttgttgcttattgccttctctcaactcatttttgttc 194  Q
    | ||||||| |||||| ||||||| ||||||     ||||| ||||||||||||||||||||||||||| |||||||||||    
T  33430236 gatgattgacatcattctctcattgttttttttattgtctattgttgttgcttattgccttctctcaacccatttttgttc 33430156  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 13331637 - 13331531
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||    
T  13331637 tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttg 13331538  T
Q  119 gtgattg 125  Q
    |||||||    
T  13331537 gtgattg 13331531  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 13342552 - 13342446
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||    
T  13342552 tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttg 13342453  T
Q  119 gtgattg 125  Q
    |||||||    
T  13342452 gtgattg 13342446  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 5672108 - 5672002
Alignment:
Q  19 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 118  Q
    ||||||||||||||||| |  ||  ||| | ||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||||    
T  5672108 tgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttg 5672009  T
Q  119 gtgattg 125  Q
    |||||||    
T  5672008 gtgattg 5672002  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 15762080 - 15761973
Alignment:
Q  18 atgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 117  Q
    |||||||||||||  ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | |||||||||| ||||||||||||||||||    
T  15762080 atgttcatcaactatttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagattt 15761981  T
Q  118 ggtgattg 125  Q
    ||||||||    
T  15761980 ggtgattg 15761973  T

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