View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898-Insertion-1 (Length: 1070)
Name: NF4898-Insertion-1
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898-Insertion-1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 812; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 8 - 1070
Target Start/End: Complemental strand, 31067015 - 31065943
Alignment:
| Q |
8 |
taaagaagttaaggtaaagtgttattatttcttagcctcctttactccacatctctctcagcattttctttttcctcaagaactttatgctaaaaacaca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31067015 |
taaagaagttaaggtaaagtgttattatttcttagcctcctttactccacatctctctcagccttttctttttcctcaagaactttatgctaaaaacaca |
31066916 |
T |
|
| Q |
108 |
gatgatacaccatacgtaaaatttgtctaaatctaggcttattgtttgacctcagacttatttctatatatcaaaaatgacaatgctcaaccaagtgagt |
207 |
Q |
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| T |
31066915 |
ggtgatacaccatacgtaaaattcgtctaaatctaggcttactgtttgacctcagacttatttctatatatcaaaaatgacaatgctcaaccaagtgagt |
31066816 |
T |
|
| Q |
208 |
tgttaattgttgagatgagttgtgaattgttatgttagtannnnnnnnncccttgtcagaaatcgaacattggacttttcaacttattaacttctttgat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31066815 |
tgttaattgttgagatgagttgtgaattgttatgttagtatttttttttcccttgtcagaaatcgaacattggactttttaacttattaacttctttgat |
31066716 |
T |
|
| Q |
308 |
cccttagcttaaccaagtgagctactcaccccccgttcatcagcaggagattatagatatacatatataagttgtggcaatggatagaagatgaacttac |
407 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
31066715 |
cccttagcttaaccaagtgagctactcatcccccgttcatcagtaggagattacagatatacatatataggttgtggcaatggatagaaaatgaacttac |
31066616 |
T |
|
| Q |
408 |
aaagatgacttctttacaggcaatggcagaccgcatcattggaatgaggactgcactacgagagaacttggaaaacctcggatctcctttgccatggaat |
507 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31066615 |
aaagatgacttctttacaggtaatggcagaccgcatcattggaatgaggactgcactacgagagaacttggaaaaccttggatctcctttgccatggaat |
31066516 |
T |
|
| Q |
508 |
cacataaccaatcaggtatttttctttgcttattttagttgcttgaggagttttcatccctttccccttatattcatggttacttggagaccaagcatct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31066515 |
cacataaccaatcaggtatttttctttgcttattttagttgcttgaggagttttcatccctttccccttatatttatggttacttggagaccaagcatct |
31066416 |
T |
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| Q |
608 |
tggtatgggagagggatatatgtttgcattgaacttcttttcatcattttcacatcaaagtgttnnnnnnnggattgaacttgtgcagattggaatgttc |
707 |
Q |
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| T |
31066415 |
tggtatgggagagggatatatgtttggattgaacttcttttcatcattttcacaacaaagtgttaaaaaaaggattgaacttgtgcagattggaatgttc |
31066316 |
T |
|
| Q |
708 |
tgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatatttacatgactcgtagtggtcgtataaggttacacacctaatctt |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31066315 |
tgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatatttacatgactcgtagtggtcgtataaggttacacacctaatctt |
31066216 |
T |
|
| Q |
808 |
aagtctctttctattggaaattatctttacattatggcttatgagttcccttgaagattgacacatactgtgtttacttacattacatatatgcgattct |
907 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| | |
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| T |
31066215 |
aagtctctttctattgg-aattatctttacattatgacttatgagtt-ccttgaagattgacacatactatgtttacttacattacatatatgtgatttt |
31066118 |
T |
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| Q |
908 |
tgacagtatggctgggtcttaataacagcaacgttggatatgt-gctaacgctatc-acgaagttacaaaatcag-ctaa--ta-tcatttatgctacac |
1001 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || ||||||||||||||| |
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| T |
31066117 |
tgacagtatggct-ggtcttaatacaagcaacgttggatatgtggctaacgctatcaacgaagttacaaaatcagcctaaattattcatttatgctacac |
31066019 |
T |
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| Q |
1002 |
a-caacctttgtc---tgaaatgacaaaagctcagaggtag-atca--ggagggagtacaaataaatttgggcaca |
1070 |
Q |
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| ||| |||||| ||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||| |
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| T |
31066018 |
accaaattttgtccttggaaatgacaaaagctcagaagtagaatcaagggagggagtacaataaaatttgggcaca |
31065943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 369 - 524
Target Start/End: Complemental strand, 31073774 - 31073619
Alignment:
| Q |
369 |
catatataagttgtggcaatggatagaagatgaacttacaaagatgacttctttacaggcaatggcagaccgcatcattggaatgaggactgcactacga |
468 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
31073774 |
cataaataagttgtggcaatggatagaaaatgaacttacatagatggcgtctttacaggttatggcagaccgcatcattggaatgagaactacactacga |
31073675 |
T |
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| Q |
469 |
gagaacttggaaaacctcggatctcctttgccatggaatcacataaccaatcaggt |
524 |
Q |
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||||| |||||||| || || ||||| ||||||||||||||||||||||||||||| |
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| T |
31073674 |
gagaatttggaaaatctggggtctccgttgccatggaatcacataaccaatcaggt |
31073619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 688 - 799
Target Start/End: Complemental strand, 31073384 - 31073273
Alignment:
| Q |
688 |
ttgtgcagattggaatgttctgctacagcgggatgacaccagaacaagttgatcgtttgacaaacgagtttcatatttacatgactcgtagtggtcgtat |
787 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
31073384 |
ttgtgcagattggcatgttctgctacagtgggatgacaccagaacaggttgatcgtttgacaagcgagtttcatatttacatgactcgtaatggtcgtat |
31073285 |
T |
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| Q |
788 |
aaggttacacac |
799 |
Q |
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| T |
31073284 |
aaggtgacacac |
31073273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 31073581 - 31073482
Alignment:
| Q |
527 |
ttttctttgcttattttagttgcttgaggagttttcatccctttc-cccttatattcatggttacttggagaccaagcatcttggtatgggagagggata |
625 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
31073581 |
ttttctttgcttattgtagttgcttgaggagttttcatccccttctctcttatttttatggttacttggagatcaagtatcttggtaggggagagggata |
31073482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 981
Target Start/End: Complemental strand, 31073199 - 31073098
Alignment:
| Q |
880 |
tttacttacattacatatatgcgattcttgacagtatggctgggtcttaataacagcaacgttggatatgt-gctaacgctatc-acgaagttacaaaat |
977 |
Q |
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||||||||||||||||| ||| || | |||||||||||||| |||||||| |||||||||||||||| ||||| |||||| |||| |||||||||| |
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| T |
31073199 |
tttacttacattacatacatgtaat-cacgacagtatggctgg-tcttaatacgggcaacgttggatatgtggctaatgctatcaacgaggttacaaaat |
31073102 |
T |
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| Q |
978 |
cagc |
981 |
Q |
| |
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|||| |
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| T |
31073101 |
cagc |
31073098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 31074253 - 31074220
Alignment:
| Q |
8 |
taaagaagttaaggtaaagtgttattatttctta |
41 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
31074253 |
taaagaagttaaggtaaagtgttactatttctta |
31074220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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