View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898-Insertion-2 (Length: 1060)
Name: NF4898-Insertion-2
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898-Insertion-2 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 229 - 940
Target Start/End: Original strand, 49490952 - 49491666
Alignment:
| Q |
229 |
catttaattggattatagtataagattaatcaatcatttaaattgaatcacatgtgattttaatctttagatcggataactttctatctgaaattcaaat |
328 |
Q |
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| T |
49490952 |
catttaattggattata---taagattaatcaatcatttaaattgaatcatatgtaattttaatctttagatcggataactttttatctgaaactcaaac |
49491048 |
T |
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| Q |
329 |
tcaatctaatcctcatgccgaatatccctacaccgaaacataatgttatgtacacaacttattcccattactcatgtgcgtatagaatttagatcatcta |
428 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49491049 |
tcaatctaattctcatgccgaatatccctacaccaaaacataatgttatgtacacaacttattcccattactcatgtgcgtatggaatttagatcatcta |
49491148 |
T |
|
| Q |
429 |
aagtttaaagtgnnnnnnnttgttatttaaacaaatttatgatttgttatgacatatatacaatattcacctttaatttattagttaattgtgagtatta |
528 |
Q |
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| T |
49491149 |
aagtttaaagtgaaaaaagttgttatttaaacaaatttatgatttgttatgacatatatacaatattcacctttaatttattaattaattgtgagtatta |
49491248 |
T |
|
| Q |
529 |
ttattcaccttacattttaaagtgagagatattcactttaaaagagtaagattcatgtataagcatggaccaatatgaattatattggtcatgatgcatg |
628 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49491249 |
ttattcaccttacattttaaagtgaga--tattcactttaaaagagtaagattcgtttataagcatggaccaatatgaattatattggtcatgatgcatg |
49491346 |
T |
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| Q |
629 |
taactagcttccctgaaaaactaaattggcaactaatgggtcatagaaaagcaaagtgcgcacagaatgttcaaagaagttttctactcataacaatttg |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49491347 |
taactagcttccctgaaaaactaaattggcaactaatgggtcatagaaaagcaaagtgcgcacagaatgttcaaagaagttttctactcataacaatttg |
49491446 |
T |
|
| Q |
729 |
aattttcttttcggccctctaagtgctcgtgcgtcttgttcttcaaatcctaaaatt---cnnnnnnntgggagattttgaatgtgttttattatgtac- |
824 |
Q |
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| T |
49491447 |
aattttcttcttggccctctaagtgctcgtgcatcttgttcttcaaatcctaaaattaaaaaaaaaaatgggagattttgaatgtgttttattatgtact |
49491546 |
T |
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| Q |
825 |
--nnnnnnnnnatcaagtaaagaaattctataaaagacttggagagggttagaatcctttaacagc-aaagtgcttacatc-aaaggt-gcaaatattac |
919 |
Q |
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| T |
49491547 |
cttttttttttatcaagtaaagaaattctataaaagacctggagagggtcagaa-cccttaacagcaaaagtgcttacatcaaaaggtataaaatattac |
49491645 |
T |
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| Q |
920 |
atcacaaagatctataataag |
940 |
Q |
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| T |
49491646 |
atcacaaagatctataataag |
49491666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 49490765 - 49490906
Alignment:
| Q |
8 |
gtccgcactgccgattagcatgacggggtccaaccaatcctatatgggaccgcacgttgcataatgcatacaaattaatgtctccttttctttacaacat |
107 |
Q |
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| T |
49490765 |
gtccgcactgccgattagcatgacggggtccaaccaatcctatatgggaccgcacgttgcataatgcatacaaattaatgtctccttttctttacaacat |
49490864 |
T |
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| Q |
108 |
tgatgtcatctatggtacatacgactaagtgatatatcagat |
149 |
Q |
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| T |
49490865 |
taatgtcacctatggtacatacgactaagtgatatatcagat |
49490906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 182690 - 182632
Alignment:
| Q |
449 |
tgttatttaaacaaatttatgatttgttatgacatatatacaatattcacctttaattt |
507 |
Q |
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| T |
182690 |
tgttatttaaacaacctcatgatttgttattatatatttacaatattcacctttgattt |
182632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 449 - 507
Target Start/End: Original strand, 14634602 - 14634660
Alignment:
| Q |
449 |
tgttatttaaacaaatttatgatttgttatgacatatatacaatattcacctttaattt |
507 |
Q |
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|||||||||||||| | |||||||||||| | |||| |||||||||||||||| |||| |
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| T |
14634602 |
tgttatttaaacaacctcatgatttgttattatatatttacaatattcacctttgattt |
14634660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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