View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4898-Insertion-3 (Length: 894)

Name: NF4898-Insertion-3
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4898-Insertion-3
NF4898-Insertion-3
[»] chr6 (2 HSPs)
chr6 (465-682)||(10985143-10985360)
chr6 (695-894)||(10990407-10990622)
[»] scaffold0199 (2 HSPs)
scaffold0199 (295-450)||(9288-9445)
scaffold0199 (57-104)||(9622-9669)
[»] chr3 (4 HSPs)
chr3 (295-439)||(53598103-53598247)
chr3 (4-57)||(299943-299996)
chr3 (13-48)||(30953036-30953071)
chr3 (13-48)||(30968848-30968883)
[»] chr5 (1 HSPs)
chr5 (295-437)||(38316364-38316510)
[»] chr2 (1 HSPs)
chr2 (4-57)||(17976664-17976717)
[»] chr4 (1 HSPs)
chr4 (18-57)||(50650293-50650332)
[»] chr8 (1 HSPs)
chr8 (4-57)||(33154790-33154843)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 465 - 682
Target Start/End: Original strand, 10985143 - 10985360
Alignment:
Q  465 attgttacaatttcaggtgtgttatgaaagctgttatgtaagctcataatgtatcatccatctttttggatcaatctttctctaaaatatgtttgagact 564  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10985143 attgttataatctcaggtgtgttttgaaagctgttatgtaagctcataatgtatcatccgtctttttggatcaatctttctctaaaatatgtttgagact 10985242  T
Q  565 tccaattgtcaactcgtttaaagttgttatggtgtaaccaccttatgcttcacattgtattttgcaagaacactctccaatattgattacataaatgttt 664  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10985243 tccaattgtcaactcgtttcaagttgttatggtgtaaccatcttatgcttcacattgtattttgcaagaacactctccaatattgattacataaatgttt 10985342  T
Q  665 tcgtttgtcacttatcaa 682  Q
    |||||||||||| |||||    
T  10985343 tcgtttgtcactgatcaa 10985360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 695 - 894
Target Start/End: Original strand, 10990407 - 10990622
Alignment:
Q  695 tatagcttcaatttattaggtgacgtaaaggttagaaaaagatgaagggaaaggtcccatgaaatcagtaccccgacaa----------------ccaaa 778  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||    
T  10990407 tatagcttcaatttattaggtgacataaaggttagaaaaagatgaagggaaaggtcccatgaaatcagtaccccgacaaccaaaagttccaatttccaaa 10990506  T
Q  779 atttcgtgtaggggcatctcannnnnnnnagcaatactgcttgttgatcaattttatctccatttgtaatggcctccatacgaagtactatggcaatgtt 878  Q
    |||||||||||| ||||||||        |||||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  10990507 atttcgtgtaggagcatctcattttttttagcaataccgcatgttgatcagttttatctccatttgtaatggcctccatatgaagaactatggaaatgtt 10990606  T
Q  879 acatgatgtcccttta 894  Q
    | ||||||||||||||    
T  10990607 agatgatgtcccttta 10990622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 295 - 450
Target Start/End: Complemental strand, 9445 - 9288
Alignment:
Q  295 aaaaacatgggaagaataatcatctgatccaatattgatgttttt--taatccttttggttnnnnnnntgtaattagagacacatgacaaaaacatgagg 392  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||       ||||||||||||||| ||||||||||||||||    
T  9445 aaaaatatgggaagaataatcatctgatccaatattgatgtttttcttaatccttttgattaaaaaaatgtaattagagacacgtgacaaaaacatgagg 9346  T
Q  393 gatgacatgatatagtatatgctattaattaataactctttataaggcagtatttaat 450  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  9345 gatgacatgacataatatatgctattaattaataactctttataaggtagtatttaat 9288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 9669 - 9622
Alignment:
Q  57 tagaataatttcattcctcaccctaaaatacacggagggctatagaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9669 tagaataatttcattcctcaccctaaaatacacggagggctatagaat 9622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 295 - 439
Target Start/End: Original strand, 53598103 - 53598247
Alignment:
Q  295 aaaaacatgggaagaataatcatctgatccaatattgatg---ttttttaatccttttggtt--nnnnnnntgtaattagagacacatgacaaaaacatg 389  Q
    |||||||||||||||||||||||| |||||||||||||||   |||||||||| ||||||||         ||||||||||||||||||||||| |||||    
T  53598103 aaaaacatgggaagaataatcatccgatccaatattgatgtttttttttaatctttttggttaaaaaaacatgtaattagagacacatgacaaatacatg 53598202  T
Q  390 agggatgacatgatatagtatatgctattaattaataactctttataagg 439  Q
     | || || ||||||    |||||||||||||||||| ||||||||||||    
T  53598203 -gagacgatatgata----atatgctattaattaatatctctttataagg 53598247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 299996 - 299943
Alignment:
Q  4 aacaaaaacatgtatgtttagctttcaaccacaaaaaagagagtagctttactt 57  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  299996 aacaaaagcatgtttgtttagctttcaaccataaaaaagagagtagctttactt 299943  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 30953036 - 30953071
Alignment:
Q  13 atgtatgtttagctttcaaccacaaaaaagagagta 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  30953036 atgtctgtttagctttcaaccacaaaaaagagagta 30953071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 30968848 - 30968883
Alignment:
Q  13 atgtatgtttagctttcaaccacaaaaaagagagta 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  30968848 atgtctgtttagctttcaaccacaaaaaagagagta 30968883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 437
Target Start/End: Original strand, 38316364 - 38316510
Alignment:
Q  295 aaaaacatgggaagaataatcatctgatccaatattgatgtttttt---aatccttttggttnnnnnnn-tgtaattagagacacatgacaaaaacatga 390  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||   |||| || ||||         |||||| ||||||||||| ||||||||||     
T  38316364 aaaaatatgggaagaattatcatctaatccaatattgatgtttttttttaatctttctggtacgaaaacatgtaatcagagacacatgccaaaaacatgg 38316463  T
Q  391 gggatgacatgatatagtatatgctattaattaataactctttataa 437  Q
    |||  ||||||||||| |||||| |||||||||||| ||||||||||    
T  38316464 ggggcgacatgatataatatatgatattaattaatatctctttataa 38316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 17976717 - 17976664
Alignment:
Q  4 aacaaaaacatgtatgtttagctttcaaccacaaaaaagagagtagctttactt 57  Q
    ||||||| ||||| | |||||||||||||||||||||||||| |||||||||||    
T  17976717 aacaaaagcatgtctctttagctttcaaccacaaaaaagagaatagctttactt 17976664  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 50650332 - 50650293
Alignment:
Q  18 tgtttagctttcaaccacaaaaaagagagtagctttactt 57  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  50650332 tgtttagctttcaaccacaaaaaagagagtaactttactt 50650293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 33154843 - 33154790
Alignment:
Q  4 aacaaaaacatgtatgtttagctttcaaccacaaaaaagagagtagctttactt 57  Q
    |||||||  |||| ||||||||||||||||||||||||||||||| ||| ||||    
T  33154843 aacaaaaggatgtctgtttagctttcaaccacaaaaaagagagtaacttaactt 33154790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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