View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898-Insertion-5 (Length: 246)
Name: NF4898-Insertion-5
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898-Insertion-5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 7875994 - 7876232
Alignment:
| Q |
8 |
ttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgtaaagaaacttggcc |
107 |
Q |
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| T |
7875994 |
ttttccataataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgtaaagaaacttggcc |
7876093 |
T |
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| Q |
108 |
atcactacattcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaagtggctttggcgattgttgtttta |
207 |
Q |
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| T |
7876094 |
atcactacactcccaaatttcattaacatttagaaggaagctctgaccttcaaaattgtaactcatttgatttcaagtggctttggcgattgttgtttta |
7876193 |
T |
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| Q |
208 |
ccaaccccgtttgtctcccatacccctatgattatggta |
246 |
Q |
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| T |
7876194 |
ccaaccccatttgtcccccatacccctatgattatggta |
7876232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 7890780 - 7890856
Alignment:
| Q |
25 |
tttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaagaagctgccgctgtaaagaaac |
101 |
Q |
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| T |
7890780 |
tttcctgattcaactgtatctatatgtatctttgttgttttgcagatgtctaaaagaagttgtcgctggaaagaaac |
7890856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 7890915 - 7890973
Alignment:
| Q |
157 |
tcaaaattgtaactcatttgatttcaagtggctttggcgattgttgttttaccaacccc |
215 |
Q |
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| T |
7890915 |
tcaaaagtgaaactcatttgattataagtggctttagcaattattgttttaccaacccc |
7890973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34735427 - 34735491
Alignment:
| Q |
16 |
aataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag |
80 |
Q |
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| T |
34735427 |
aatatcatttttcctgattcaactgtatctatctttatttttgttgttttgtagatatcagaaag |
34735491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34727670 - 34727734
Alignment:
| Q |
16 |
aataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag |
80 |
Q |
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| T |
34727670 |
aatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag |
34727734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34730828 - 34730892
Alignment:
| Q |
16 |
aataccatttttcctgattcaactgtatttatctgtatctttgtcattttgtagatatctgaaag |
80 |
Q |
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| T |
34730828 |
aatatcatttttcctgattcaactgtttctatctttatttttgttgttttgtagatatcagaaag |
34730892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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