View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4898_high_2 (Length: 406)
Name: NF4898_high_2
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898_high_2 |
 | |
|
| [»] scaffold1603 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 171 - 390
Target Start/End: Original strand, 9625417 - 9625633
Alignment:
| Q |
171 |
taatgatggagtgtggtggaggatcagctgatctagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttc |
270 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9625417 |
taatgatagagtgtggtggaggatcagctaatgtagcaaattcacacagtttgtcgcag---tagcaaatatcagctatcaatccatgatctgacggttc |
9625513 |
T |
|
| Q |
271 |
caattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtg |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9625514 |
caattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagattagacggtgtagaacagctaaagcgtgcaactgcgtg |
9625613 |
T |
|
| Q |
371 |
taaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9625614 |
taaatattacagcagtaaat |
9625633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 39305477 - 39305660
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||| | | |||| ||||||||||||||| | |
|
|
| T |
39305477 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaacaatttcatac |
39305573 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
39305574 |
aatgtcaaatcttaaccgttcacttcagatcagacggtatagaacagctacggcgtgcaactgcgtgtaaatattacagcaggaaat |
39305660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 9625207 - 9625354
Alignment:
| Q |
11 |
atcatcacgttttaagctagttcaagtaatacatttaagccagttcaagaaataactttatataaaggaaattaagagaaatgttagggtcatattttct |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9625207 |
atcatcatgttttaagctagttcaagtaatacttttaagccagttcaagaaataact--atataaaggaaaataagagaaatgttagggtcatattttct |
9625304 |
T |
|
| Q |
111 |
aagatagaagatgttccctttgctttcagatttgaagatgttccctttct |
160 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9625305 |
aagatagaagatgaaacctttgctttcagatttgaagatgttccctttct |
9625354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 223 - 360
Target Start/End: Complemental strand, 17540129 - 17539992
Alignment:
| Q |
223 |
tttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgt |
322 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||| | |||| |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
17540129 |
tttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacagcacaaatttcaacaatttcacacaatgtcaaatcttaaccgt |
17540030 |
T |
|
| Q |
323 |
tcacttcagatcagacggtgtagaacagctaaagcgtg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17540029 |
tcacttcagatcagacggtgtagaacagctacagcgtg |
17539992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 45903498 - 45903315
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| || | |
|
|
| T |
45903498 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaattttacac |
45903402 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45903401 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaat |
45903315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 41570072 - 41570107
Alignment:
| Q |
355 |
agcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41570072 |
agcgtgcaactgcgtgtaaatattacagcaggaaat |
41570107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 23594538 - 23594721
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||| | |
|
|
| T |
23594538 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacaaatttcaacaatttcacac |
23594634 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23594635 |
aatgtcatatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaat |
23594721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 26377991 - 26377808
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||| | |
|
|
| T |
26377991 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagtcatcaatccatgatctgacggttccaattcacagcacaaatttcaacaatttcacac |
26377895 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26377894 |
aatgtcagatcttaaccattcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcaggaaat |
26377808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 14277230 - 14277412
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||||| |||||||||| | ||| ||||||||||||| || | |
|
|
| T |
14277230 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccgtcaattcatgatctgacgattccaattcacagcacgaatttcaacaatttaacac |
14277326 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
14277327 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctatagcgtgcaactaagtgtaaata-tacagcaggaaat |
14277412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 204 - 382
Target Start/End: Original strand, 32495743 - 32495918
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||| | |
|
|
| T |
32495743 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacacaaatttcaataatttcacac |
32495839 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32495840 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacag |
32495918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 19595987 - 19596170
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| || | |
|
|
| T |
19595987 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcacagatttcaacaattttacac |
19596083 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |
|
|
| T |
19596084 |
aatatcagatcttaaccgttcacttcagatcagacggtgtagaacagctacagcgtgtaactgcgtgtaaatattacagcaggaaat |
19596170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 46336493 - 46336310
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||||||||||||| |||||||||||||||| | |||| ||||||| |||||||| | |
|
|
| T |
46336493 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatttgacggttccaattcacagcacaaatttcaataatttcacac |
46336397 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46336396 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatattacagcaggaaat |
46336310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 390
Target Start/End: Complemental strand, 43633013 - 43632846
Alignment:
| Q |
223 |
tttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgt |
322 |
Q |
| |
|
||||| || ||||||||| ||| | |||||||||||||||||||||||||||||| | ||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
43633013 |
tttgctgctgtagcaaatctcaaccatcaatccatgatctgacggttccaattcacagcacgaaattcaacaatttcacacaatgtcagatcttaaccgt |
43632914 |
T |
|
| Q |
323 |
tcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||| || | |||||| |||| |||||| ||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
43632913 |
tcattttaaatcagatggtgcagaacaactacagcgtgcaactgcgtgtaatatttacagcagaaaat |
43632846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 43997170 - 43997353
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||| ||||| |||||| ||||||||||||||| ||||||| | |||| |||||||||||||||| | |
|
|
| T |
43997170 |
tagcaaattcacacagtttat---cgcagttgcaaatctcagccatcaattcatgatctgacggtttcaattcacagcacatatttcaacaatttcacac |
43997266 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||| ||||||| |||||||||| |||||||||||||||| | |||| ||| ||| | ||||||||||||| ||||||||| |||| |
|
|
| T |
43997267 |
aatatcagatcataaccgttcatttcagatcagacggtgcaaaacaactacagcctacaactgcgtgtaatatttacagcagaaaat |
43997353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 11692643 - 11692536
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctga-cggttccaattcataacacagatttcaacaatttcacg |
302 |
Q |
| |
|
|||||||||||| |||||| || | ||||| |||| ||||| |||||||||| | |||| || ||| |||||| || || ||||||||||||||||| |
|
|
| T |
11692643 |
tagcaaattcacgcagttt---gctgtagtagaaaatctcagccatcaatccataacctgatcgtttcaaattcacaataccgatttcaacaatttcaca |
11692547 |
T |
|
| Q |
303 |
caatgtcagat |
313 |
Q |
| |
|
|||| |||||| |
|
|
| T |
11692546 |
caatatcagat |
11692536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 223 - 390
Target Start/End: Original strand, 14792372 - 14792539
Alignment:
| Q |
223 |
tttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgt |
322 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14792372 |
tttgccgcagtagcaaatctcagccatcaatctatgatctgacggttccaattcacaacacaaatttcaacaatttcacacaatgtcagatcttaaccgt |
14792471 |
T |
|
| Q |
323 |
tcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14792472 |
tcacttcagatcagacggtgtagaacagctacagcgtgcaactgcgtgtaaatattacagcagcaaat |
14792539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 4926120 - 4926303
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || || ||||||||| ||||| ||||||||||||||| ||||||| ||||| || |||| |||||||||||||||| | |
|
|
| T |
4926120 |
tagcaaattcacacagttt---gctgctgtagcaaatctcagccatcaatccatgatctaacggttctaattcgtagcacaaatttcaacaatttcacac |
4926216 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4926217 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtacaacagctacagcgtacaactgcgtgtaaatattacagcaggaaat |
4926303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 19681121 - 19680945
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| |||| | |||| ||||||||||| | |
|
|
| T |
19681121 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacaacataaattttaacaatttcacac |
19681025 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagc |
383 |
Q |
| |
|
||| ||| ||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
19681024 |
aatatcaaatcttaaccattcatttcagatcagacggtgtagaacagctacagcgtataactgcgggtaaatattacagc |
19680945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 229 - 353
Target Start/End: Complemental strand, 41985405 - 41985281
Alignment:
| Q |
229 |
gcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgcaatgtcagatcttaaccgttcactt |
328 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
41985405 |
gcagtagcaaatctcagccatcaatccatgatccgacggttccaattcacaacacggatttcaacaatttcatacaatgtcagatcttgaccgctcactt |
41985306 |
T |
|
| Q |
329 |
cagatcagacggtgtagaacagcta |
353 |
Q |
| |
|
||||||| |||||| |||||||||| |
|
|
| T |
41985305 |
cagatcaaacggtgcagaacagcta |
41985281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 353
Target Start/End: Original strand, 7260271 - 7260417
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||| ||||| ||||||| |||||||||| ||| ||||| | | || |||||| |||||||||| | |
|
|
| T |
7260271 |
tagcaaattcacacagttt---gccgcagtagtaaatctcagccatcaatctatgatctgactgtttcaatttacagcaaagattttaacaatttcatac |
7260367 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagcta |
353 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||||| || |||||||| |
|
|
| T |
7260368 |
aatgtcagatcttaaccattcattttagatcagacggtttaaaacagcta |
7260417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 12240748 - 12240565
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||| | || | |||||||||||||||| | |
|
|
| T |
12240748 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaattcacagcataaatttcaacaatttcacac |
12240652 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
12240651 |
aatgtcagatcttaatcgttcacttcagatcagacggtgtagaacagctacaacgtgcaactgcgtgtaaatattacagcaggaaat |
12240565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 49620765 - 49620582
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||| ||||| |||||||||||||||||||||||||||| | | |||| |||||||||||||||| | |
|
|
| T |
49620765 |
tagcaaattcacatagttt---gccgcagtagcaaatctcagccatcaatccatgatctgacggttccaatttacagcacaaatttcaacaatttcacac |
49620669 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
49620668 |
aatgtcagatcttaacgtttcacttcagatcagacggtgtagaacaactacaacgtacaactgcatgtaaatattacagcaggaaat |
49620582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 342
Target Start/End: Original strand, 23666604 - 23666739
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || | || || |||| |||| |||||||||| ||| |||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
23666604 |
tagcaaattcacacagttt---gccgtaggagaaaatctcagtcatcaatccataatccgacggttccaattcgcaacacggatttcaacaatttcacac |
23666700 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtg |
342 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23666701 |
aatgtcagatcttgaccgttcacttcaaatcagacggtg |
23666739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 296
Target Start/End: Complemental strand, 24851097 - 24851008
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaat |
296 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24851097 |
tagcaaattcacacagtttt---ccgcagtagtaaatctcatccatcaatccatgatctgacggttccaattcacaacacagatttcaacaat |
24851008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 14625634 - 14625577
Alignment:
| Q |
285 |
gatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagatcagacggtg |
342 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
14625634 |
gatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtg |
14625577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 38992890 - 38992707
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||| ||||||| ||||||||| |||| ||||||| | |||||||||||| |||||||| | |
|
|
| T |
38992890 |
tagcaaattcacacagttt---gccgcagtagcaaatctcagccatcaatctatgatctgaaggttgcaattcaaagcacagatttcaataatttcacac |
38992794 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaaatattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38992793 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacaactacagcgtgcaactgcgtgtaaatattacagcaggaaat |
38992707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 13083609 - 13083793
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||| ||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||||||||| | |
|
|
| T |
13083609 |
tagcaaatttacacagttt---gccgcagtagcaaatctcagcgatcaatccatgatctgatggttccaattcacagcacggatttcaacaatttcacac |
13083705 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgtgcaactgcgtgtaa-atattacagcagtaaat |
390 |
Q |
| |
|
|||||||||||| | | ||||| |||||||||| ||||| |||||||||| || |||||||||||||||| || ||||||||| |||| |
|
|
| T |
13083706 |
aatgtcagatctgagctgttcagttcagatcaggcggtgcagaacagctacagtgtgcaactgcgtgtaatattttacagcagaaaat |
13083793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1603 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold1603
Description:
Target: scaffold1603; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 204 - 359
Target Start/End: Complemental strand, 1063 - 911
Alignment:
| Q |
204 |
tagcaaattcacacagttttttgcagcagtagcaaatatcagctatcaatccatgatctgacggttccaattcataacacagatttcaacaatttcacgc |
303 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||| ||| | |||||| ||||||||||||||||||||||| | ||| |||||||||||||| || | |
|
|
| T |
1063 |
tagcaaattcacacagtttgtcgcag---tagcaaatctcaaccatcaattcatgatctgacggttccaattcacagcacggatttcaacaattttacac |
967 |
T |
|
| Q |
304 |
aatgtcagatcttaaccgttcacttcagatcagacggtgtagaacagctaaagcgt |
359 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
966 |
aatgtcagatcttgaccgttcacttcagatcagacggtacagaacagttacagcgt |
911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 21998 - 21904
Alignment:
| Q |
248 |
atcaatccatgatctgacggttccaattcataacacagattt---caacaatttcacgcaatgtcagatcttaaccgttcacttcagatcagacg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| ||| ||||| || |||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
21998 |
atcaatccatgatctgacggttccaattcacaatacagattttaacaataattttacacaatattagatcttaaccgttcaattcagatcagacg |
21904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 191749 - 191806
Alignment:
| Q |
285 |
gatttcaacaatttcacgcaatgtcagatcttaaccgttcacttcagatcagacggtg |
342 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
191749 |
gatttcaacaatttcacgcagtgtcagatcttgaccaatcactttagatcggacggtg |
191806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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