View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898_high_3 (Length: 395)
Name: NF4898_high_3
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 46109512 - 46109875
Alignment:
| Q |
16 |
tgtagaatgtcagaatttgaacaaactgctatttactatgatccgtggtcgacaacattgctctatacacagtttacgagaagacatttttgtttgatcc |
115 |
Q |
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| T |
46109512 |
tgtagaatgtcagaatttgaacaaactgctatttactatgatccgtggtcgacaacattgctctatacacagtttacgagaagacatttttgtttgatcc |
46109611 |
T |
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| Q |
116 |
tagtaggaaaatgctttattgttgttgcacttgtcatttatcaacttaccatatcttactaacggttatcctgtatgctgaaagcttcacatgatgagga |
215 |
Q |
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| T |
46109612 |
tagtaggaaaatgctttattgttgttgcacttgtcatttatcaacttaccatatcttactaacggttctcctgtatgctgaaagcttcacatgatgagga |
46109711 |
T |
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| Q |
216 |
gtcccacagtgttacagtaaactaatacacacccaaggcaattgcagtttctggcgtaatacaatatgatttacattggnnnnnnncgctgattacttaa |
315 |
Q |
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| T |
46109712 |
gtccgacagtgttacagtaaactaatacaaacccaaggcaattgcagtttctggcgtaatacaatatgatttacattggttttttttgctgattacttag |
46109811 |
T |
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| Q |
316 |
ttcctgatttttctgtagatgccagtaaatcattaaattataataatagaaacactctgttctt |
379 |
Q |
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| T |
46109812 |
ttcctgatttttctgtagatgccagtaaatcattaaattataataatagaaacactctgttctt |
46109875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 46099846 - 46099919
Alignment:
| Q |
114 |
cctagtaggaaaatgctttattgttgttg------cacttgtcatttatcaacttaccatatcttactaacggt |
181 |
Q |
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| T |
46099846 |
cctagtaggaaattgctttattgttgttgttgtttcacttgttgtttatcaatttaccatatcttactaacggt |
46099919 |
T |
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