View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898_low_1 (Length: 435)
Name: NF4898_low_1
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 47125397 - 47124996
Alignment:
| Q |
19 |
catgtatcattaagactagaaagtctcacctaaaacacgagacacataatctaatagcaaataacttctttttg--aaggattttgattttgtgaaatgc |
116 |
Q |
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| T |
47125397 |
catgtatcattaagactagaaagtctcacctaaaacacgagacacataatctaatagcaaataacttcttttttgaaaggattttgattttgtgaaatgc |
47125298 |
T |
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| Q |
117 |
agtttacactaaaacaaaccttttacaacttaacaacttcattttcaattgaagatcactgtgttgtttgaacctctcatgcatgtcttacatattttag |
216 |
Q |
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| T |
47125297 |
agtttacactaaaacaaaccttttacaacttaacaacttcattttcaattgaagatcact-------ttgaacctctcatacatgtcttacatattttag |
47125205 |
T |
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| Q |
217 |
cggtagctaaggaatatattacacttgaaaactttccctacgaggggttgagaaacaagaaaatcccatgacaatgaatataggtaaaaattatggcatt |
316 |
Q |
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| T |
47125204 |
cggtagctaaggaatatattacacttgaaaactttccctacgaggggttgagaaacgagaaaatcccatgacaatgaatataggtaaaaattatggcatt |
47125105 |
T |
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| Q |
317 |
gatctttaaagatctttaaagcaaatgtgctnnnnnnnnnnnnnnnnnnnnnnntcattaaggaagaccacattgaacaagagttcacttttttaggctc |
416 |
Q |
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| T |
47125104 |
gatctttaaagatctttaaagcaaatgtgctaaaagaagtaaagaaaaaataaatcattaaggaagaccacattgaacaagagttcacttttttaggctc |
47125005 |
T |
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| Q |
417 |
acacctttg |
425 |
Q |
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| T |
47125004 |
acacctttg |
47124996 |
T |
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