View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4898_low_2 (Length: 426)
Name: NF4898_low_2
Description: NF4898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4898_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 31067408 - 31067011
Alignment:
| Q |
11 |
cagagagagatgcaaaagcgatcaggatttttcttaatgatagtcatttaataggagttgctcaatcatatgcaaaaaatatgggactgtatggccagag |
110 |
Q |
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| T |
31067408 |
cagagagagatgcaaaagcgatcaggatttttcttaatgatagtcatttaataggagttgctcaatcatatgcaaaaaatatgggactgtatggccagag |
31067309 |
T |
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| Q |
111 |
agttggatgccttaggtaattttatatttatcttttgaattcagagatatatctttttggcaagtaaactgttaaagtattacttaagcataaaatgtaa |
210 |
Q |
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| T |
31067308 |
agttggatgccttaggtaattttatatttatcttttgaattcagagatatatctttttggcaagtaaactgttaaagtattacttaagcataaaatgtaa |
31067209 |
T |
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| Q |
211 |
attacattatgcaaatattacgcttataattttgagttcctcgcagcttgctttgcgaaaatgaaaaacaagccgtggcagtaaaaagtcaattgcagtt |
310 |
Q |
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| T |
31067208 |
attacattatgcaaatattacgcttataattttgagttcctcgcagcttgctttgcgaaaatgaaaaacaagctgtggcagtaaaaagtcaattgcagtt |
31067109 |
T |
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| Q |
311 |
gattgccagacccatgtacagtaatccacctcttcatggagcacttgttgtttcaactgtccttggtgatacagaactgaagaagctatggcttaaag |
408 |
Q |
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| T |
31067108 |
gattgccagacccatgtacagtaatccacctcttcatggagcacttgttatttcaactgtccttggtgatccagaactgaagaagctatggcttaaag |
31067011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 241 - 408
Target Start/End: Complemental strand, 31074416 - 31074249
Alignment:
| Q |
241 |
tttgagttcctcgcagcttgctttgcgaaaatgaaaaacaagccgtggcagtaaaaagtcaattgcagttgattgccagacccatgtacagtaatccacc |
340 |
Q |
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| T |
31074416 |
tttgtgttccttgcagcttgctttgcgaagatcagaaacaagccgtggctgttaaaagtcaattgcaattgatttccagacccatgtacagtaatccacc |
31074317 |
T |
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| Q |
341 |
tcttcatggagcacttgttgtttcaactgtccttggtgatacagaactgaagaagctatggcttaaag |
408 |
Q |
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| T |
31074316 |
tcttcatggagcacttgtcgtttcaactgtcctcagtgatccagatttgaagaagttgtggcttaaag |
31074249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 31074899 - 31074781
Alignment:
| Q |
11 |
cagagagagatgcaaaagcgatcaggatttttcttaatgatagtcatttaataggagttgctcaatcatatgcaaaaaatatgggactgtatggccagag |
110 |
Q |
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|||||||||||| |||||| |||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31074899 |
cagagagagatgtaaaagccatcaggatttttgttgatgatggtcatttattaggacttgctcaatcatatgcaaaaaatatgggactgtatggccagag |
31074800 |
T |
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| Q |
111 |
agttggatgccttaggtaa |
129 |
Q |
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| T |
31074799 |
agttggatgccttaggtaa |
31074781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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