View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899-Insertion-1 (Length: 1055)
Name: NF4899-Insertion-1
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 525 - 1014
Target Start/End: Complemental strand, 2560850 - 2560367
Alignment:
| Q |
525 |
ttagagtatccatagtgtttctgatttatacaatattctttaccattnnnnnnntaacacattatacatagatttcatttatcttgccataagctttgta |
624 |
Q |
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| T |
2560850 |
ttagaatatccacagtgtttctgatttatacaatattctttaccattaaaaaaataacacattatacatagatttcatttatcttgccataagctttgta |
2560751 |
T |
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| Q |
625 |
cttgtagtttgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtattttaaaaaatataacataaaccgaattttgtaaccagaa---aaa |
721 |
Q |
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| T |
2560750 |
cttgtagtttgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtattttaataaatataacataaaccgaattttgtaaccagaaaaaaaa |
2560651 |
T |
|
| Q |
722 |
atttatcttgccatgaacttcattatttgaagttcaattaataacttgagaatctcagtagtcaagatacaatttgagc-aaactctccaaaatagtttt |
820 |
Q |
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| T |
2560650 |
atttatcttgccatgaacttcattatttgaagttcaattaataacttgagaatctcagtagtcaagatacaattcgagcaaaactctccaaaatagtttt |
2560551 |
T |
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| Q |
821 |
tccataaca---tttaaggttacgcatagcttctaatctttaaacgattaaggtgacatctaggttatccatgaaaaaatagtaggtaatttct-cgacc |
916 |
Q |
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| T |
2560550 |
tctataacattttttaaggttacgcatagatt---------------ttaaagtgacatctagattatccatgaaaaaatagtagataatttatccgacc |
2560466 |
T |
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| Q |
917 |
aataaacaccggacacttaagtacattttcaagtgacatccataaactatcattgaccctggtaat-aaagctcaattttttataggtaatatagaaaa |
1014 |
Q |
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| T |
2560465 |
aataaacatcggacacttaagtacattttcaagtgacatccataaactatcattgaccctggtaataaaagctcaattttttataggtaatatagaaaa |
2560367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 183 - 533
Target Start/End: Complemental strand, 2562259 - 2561914
Alignment:
| Q |
183 |
actgcttctaataaaatttgcaagttcaatgaaaaatatatannnnnnnnaaaatggacattgttggcattgttactttctaactccccccaccccagcc |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562259 |
actgcttctaataaaatttgcaagttcaatgaaaaaaatatttttttt---agatggacattgttggcattgttactttctaactccccccaccccagcc |
2562163 |
T |
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| Q |
283 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcatgttaattacttcttaccattttcagtattgttactct |
382 |
Q |
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| T |
2562162 |
accaagctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcttgtta----cttcttaccattttcagtattgttactct |
2562067 |
T |
|
| Q |
383 |
tctagattatttttgtttgccttt--tatacatatttcttaccattttgggttctgtttggtgtggtgtacatgttacatttgtcgtcctttgttagcag |
480 |
Q |
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| T |
2562066 |
tctagattatttttgtttgcctttattatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttgttagcag |
2561967 |
T |
|
| Q |
481 |
tacttttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
533 |
Q |
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| T |
2561966 |
tacttttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
2561914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 2562437 - 2562305
Alignment:
| Q |
8 |
ctttctacatgcagcagcattacaactcttatggagagtttgacgcttatttgggtccca----actcaagagattagtctctgcagttacacaagaggg |
103 |
Q |
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|||||| ||||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||||||| ||||||||||| ||||||||||| ||| |
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| T |
2562437 |
ctttctgcatgcagcagcgttacaactcttatgaagagtttggcgctcatttgggtcccacaagactcaagaaattagtctctgaagttacacaagcggg |
2562338 |
T |
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| Q |
104 |
gtactcggtttacaccaaaaacaagatgtatct |
136 |
Q |
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| T |
2562337 |
gtacccggtttacaccaaaaacaagatgtatct |
2562305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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