View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899-Insertion-2 (Length: 265)
Name: NF4899-Insertion-2
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 36941289 - 36941547
Alignment:
| Q |
7 |
attcaaagggccatcaagatatgttggtacaggcatacttgatggaagattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaa |
106 |
Q |
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| T |
36941289 |
attcaaagggccatcaagatatgttggtacaggcatacttgatggaagattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaa |
36941388 |
T |
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| Q |
107 |
ggcctattattaggatcaggatgagcacaccaaagaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactg |
206 |
Q |
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| T |
36941389 |
ggcctattattaggatcaggatgagcacaccaaagaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactg |
36941488 |
T |
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| Q |
207 |
cttcaacaattctccctcttccatatagcccccaaacccattccacaatgtttatttca |
265 |
Q |
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| T |
36941489 |
cttcaacaattctccctcttccatatagcccccaaacccattccacaatgtttatttca |
36941547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 36939831 - 36939577
Alignment:
| Q |
11 |
aaagggccatcaagatatgttggtacaggcatacttgatggaagattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcc |
110 |
Q |
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| T |
36939831 |
aaaggcccctcaagatatgttggtacaggcatacttgatgaaagattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcc |
36939732 |
T |
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| Q |
111 |
tattattaggatcaggatgagcacaccaaagaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttc |
210 |
Q |
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| T |
36939731 |
tattattaggatcaggatgagcacaccaaagaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttc |
36939632 |
T |
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| Q |
211 |
aacaattctccctcttccatatagcccccaaacccattccacaatgtttatttca |
265 |
Q |
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| T |
36939631 |
aagaattttccctcttccatatagcccccaaacccactccacaatatgtatttca |
36939577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 36946656 - 36946587
Alignment:
| Q |
7 |
attcaaagggccatcaagatatgttggtacaggcatacttgatggaagattaggcaatggaacttcaaaa |
76 |
Q |
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| T |
36946656 |
attcaaagggccctcaaggtatgttggtccaggcatacttgatgaaagattaggcagtggagcttcaaaa |
36946587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 28293960 - 28294072
Alignment:
| Q |
49 |
tggaagattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaaca |
148 |
Q |
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| T |
28293960 |
tggaagatttggcaaggcaacctcaaaattaagcacttgaattgcttgtctaatcgatggtctaagactaacatcaggatgagcacaccacaatccaaca |
28294059 |
T |
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| Q |
149 |
atcatcatgcact |
161 |
Q |
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| T |
28294060 |
atcatcaagcact |
28294072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 28264145 - 28264192
Alignment:
| Q |
49 |
tggaagattaggcaatggaacttcaaaattaagcacttgaatagcttg |
96 |
Q |
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| T |
28264145 |
tggaagatttggcaatgcaacctcaaaattaagcacttgaattgcttg |
28264192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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