View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4899-Insertion-3 (Length: 256)

Name: NF4899-Insertion-3
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4899-Insertion-3
NF4899-Insertion-3
[»] chr8 (25 HSPs)
chr8 (7-189)||(15849793-15849974)
chr8 (189-250)||(21303984-21304044)
chr8 (186-256)||(15848087-15848154)
chr8 (190-250)||(31846469-31846528)
chr8 (188-251)||(8437917-8437979)
chr8 (187-250)||(34923861-34923922)
chr8 (190-245)||(40791756-40791810)
chr8 (216-250)||(13421488-13421522)
chr8 (190-256)||(14094141-14094205)
chr8 (218-256)||(17564717-17564754)
chr8 (188-250)||(30353864-30353925)
chr8 (190-256)||(40791068-40791132)
chr8 (190-243)||(3075328-3075380)
chr8 (219-256)||(34925396-34925432)
chr8 (188-245)||(41312381-41312437)
chr8 (190-251)||(43764100-43764160)
chr8 (216-245)||(44746840-44746869)
chr8 (190-250)||(8442678-8442737)
chr8 (218-250)||(11140143-11140175)
chr8 (216-256)||(12336283-12336322)
chr8 (190-250)||(14880184-14880243)
chr8 (190-242)||(17565342-17565393)
chr8 (190-250)||(22934311-22934370)
chr8 (190-250)||(25485422-25485481)
chr8 (218-250)||(31739558-31739590)
[»] chr3 (28 HSPs)
chr3 (185-255)||(1364042-1364111)
chr3 (190-256)||(23682013-23682077)
chr3 (190-256)||(24054250-24054314)
chr3 (187-256)||(47794641-47794709)
chr3 (190-248)||(2756604-2756661)
chr3 (190-256)||(18364652-18364716)
chr3 (198-256)||(41587301-41587357)
chr3 (190-250)||(18365276-18365335)
chr3 (187-250)||(4558051-4558113)
chr3 (190-245)||(11345359-11345413)
chr3 (187-250)||(11581855-11581917)
chr3 (218-256)||(291158-291195)
chr3 (218-256)||(3090408-3090445)
chr3 (218-256)||(17764952-17764989)
chr3 (218-256)||(19066272-19066309)
chr3 (190-256)||(54403581-54403645)
chr3 (193-255)||(54605787-54605847)
chr3 (216-250)||(54606419-54606453)
chr3 (187-240)||(25480546-25480598)
chr3 (190-255)||(49765120-49765183)
chr3 (219-256)||(53490721-53490757)
chr3 (218-250)||(3089799-3089831)
chr3 (218-250)||(5963106-5963138)
chr3 (190-250)||(10887732-10887791)
chr3 (190-250)||(37183100-37183159)
chr3 (218-250)||(40927542-40927574)
chr3 (218-250)||(49080604-49080636)
chr3 (190-250)||(53490071-53490129)
[»] chr2 (24 HSPs)
chr2 (190-248)||(4437976-4438033)
chr2 (190-256)||(37009650-37009714)
chr2 (190-256)||(37199590-37199654)
chr2 (190-250)||(17829070-17829129)
chr2 (217-256)||(37329745-37329783)
chr2 (218-248)||(3044974-3045004)
chr2 (218-256)||(6229875-6229912)
chr2 (188-250)||(10357116-10357177)
chr2 (218-256)||(33146081-33146118)
chr2 (190-256)||(34173704-34173768)
chr2 (186-240)||(38910690-38910743)
chr2 (187-240)||(11942943-11942995)
chr2 (188-241)||(13873990-13874042)
chr2 (188-241)||(14014115-14014167)
chr2 (218-250)||(4437358-4437390)
chr2 (218-250)||(5474670-5474702)
chr2 (218-250)||(15006476-15006508)
chr2 (190-250)||(20894276-20894335)
chr2 (218-250)||(33146698-33146730)
chr2 (218-250)||(34173092-34173124)
chr2 (218-250)||(35175668-35175700)
chr2 (218-250)||(37198970-37199002)
chr2 (218-250)||(41521663-41521695)
chr2 (216-256)||(43439789-43439828)
[»] chr7 (26 HSPs)
chr7 (190-250)||(32867898-32867957)
chr7 (190-256)||(40401542-40401606)
chr7 (190-250)||(14078376-14078435)
chr7 (190-250)||(14388404-14388463)
chr7 (204-256)||(16426000-16426050)
chr7 (216-256)||(28308661-28308700)
chr7 (187-250)||(25607607-25607669)
chr7 (190-240)||(2935766-2935815)
chr7 (218-256)||(20261572-20261609)
chr7 (190-256)||(31221446-31221510)
chr7 (216-250)||(33869238-33869272)
chr7 (187-244)||(36687313-36687369)
chr7 (187-240)||(36848503-36848555)
chr7 (219-256)||(48872059-48872095)
chr7 (190-250)||(25276-25335)
chr7 (190-250)||(317298-317357)
chr7 (216-244)||(14753878-14753906)
chr7 (190-250)||(19156071-19156130)
chr7 (190-250)||(20755470-20755529)
chr7 (218-250)||(27144228-27144260)
chr7 (188-244)||(27144842-27144897)
chr7 (190-242)||(27619637-27619688)
chr7 (218-250)||(34999232-34999264)
chr7 (218-250)||(36847879-36847911)
chr7 (190-242)||(38987772-38987823)
chr7 (218-250)||(48982534-48982566)
[»] chr5 (14 HSPs)
chr5 (190-250)||(35751536-35751595)
chr5 (187-256)||(36737439-36737506)
chr5 (186-242)||(9118851-9118906)
chr5 (190-250)||(19408559-19408618)
chr5 (190-250)||(20183380-20183439)
chr5 (190-245)||(15144432-15144486)
chr5 (192-250)||(20570150-20570207)
chr5 (190-256)||(27979251-27979315)
chr5 (190-242)||(1932025-1932076)
chr5 (218-250)||(4877370-4877402)
chr5 (190-250)||(9017667-9017726)
chr5 (190-250)||(21639038-21639097)
chr5 (186-242)||(27028644-27028699)
chr5 (218-250)||(36742577-36742609)
[»] chr4 (23 HSPs)
chr4 (190-250)||(37708795-37708854)
chr4 (188-250)||(17722768-17722829)
chr4 (187-245)||(45847768-45847825)
chr4 (190-250)||(755522-755581)
chr4 (190-250)||(26705665-26705724)
chr4 (190-250)||(35667279-35667338)
chr4 (190-241)||(754888-754938)
chr4 (190-245)||(16192316-16192370)
chr4 (190-245)||(41919909-41919963)
chr4 (190-245)||(55068863-55068917)
chr4 (218-256)||(13482230-13482267)
chr4 (190-256)||(23722042-23722106)
chr4 (190-240)||(35665972-35666021)
chr4 (190-244)||(35667758-35667811)
chr4 (198-256)||(37147767-37147823)
chr4 (190-250)||(721342-721401)
chr4 (190-250)||(796403-796462)
chr4 (192-256)||(4949956-4950018)
chr4 (190-250)||(8192986-8193045)
chr4 (218-250)||(16960252-16960284)
chr4 (198-242)||(16960878-16960921)
chr4 (187-243)||(33047232-33047287)
chr4 (216-256)||(36898090-36898129)
[»] chr6 (20 HSPs)
chr6 (198-245)||(7448891-7448937)
chr6 (188-250)||(11794763-11794824)
chr6 (190-250)||(12026193-12026252)
chr6 (190-250)||(12693865-12693924)
chr6 (190-256)||(10702925-10702989)
chr6 (218-256)||(21802595-21802632)
chr6 (190-256)||(32114398-32114462)
chr6 (188-250)||(32522499-32522560)
chr6 (188-245)||(188434-188490)
chr6 (219-256)||(15499487-15499523)
chr6 (218-250)||(4100561-4100593)
chr6 (218-250)||(4125923-4125955)
chr6 (218-250)||(10702317-10702349)
chr6 (190-250)||(11522819-11522878)
chr6 (190-250)||(12033113-12033172)
chr6 (190-250)||(14313845-14313904)
chr6 (218-250)||(32113785-32113817)
chr6 (218-250)||(32130982-32131014)
chr6 (198-238)||(32521863-32521902)
chr6 (188-240)||(34794528-34794579)
[»] chr1 (16 HSPs)
chr1 (187-250)||(8061042-8061104)
chr1 (190-256)||(16536391-16536455)
chr1 (188-256)||(18406547-18406613)
chr1 (186-256)||(31765351-31765417)
chr1 (190-250)||(45738666-45738725)
chr1 (216-247)||(46682719-46682750)
chr1 (190-248)||(28044498-28044555)
chr1 (188-250)||(29510474-29510535)
chr1 (190-248)||(45559762-45559819)
chr1 (190-256)||(45737324-45737388)
chr1 (219-256)||(17109352-17109388)
chr1 (218-251)||(45195233-45195266)
chr1 (190-250)||(19072354-19072413)
chr1 (190-250)||(19120244-19120303)
chr1 (190-250)||(41575193-41575252)
chr1 (192-256)||(50143406-50143468)
[»] scaffold0340 (1 HSPs)
scaffold0340 (190-250)||(12855-12914)
[»] scaffold0003 (4 HSPs)
scaffold0003 (204-256)||(14713-14763)
scaffold0003 (204-256)||(28859-28909)
scaffold0003 (190-245)||(421167-421221)
scaffold0003 (190-250)||(421925-421984)
[»] scaffold0695 (1 HSPs)
scaffold0695 (190-256)||(2243-2307)
[»] scaffold0189 (1 HSPs)
scaffold0189 (218-256)||(11336-11373)
[»] scaffold0068 (1 HSPs)
scaffold0068 (218-256)||(59307-59344)
[»] scaffold0289 (1 HSPs)
scaffold0289 (218-250)||(3455-3487)
[»] scaffold0201 (1 HSPs)
scaffold0201 (190-250)||(15324-15383)
[»] scaffold0105 (1 HSPs)
scaffold0105 (190-250)||(19642-19701)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 15849974 - 15849793
Alignment:
Q  7 agatctctggcagattcatcaagatgaggaagcaaacgacgcttaagattccatctgagatcatccaagtccatgtgactgagcatgtttgagaatcatc 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15849974 agatctctggcagattcatcaagatgaggaagcaaatgacgcttaagattccatctgagatcatctaagtccatgtgactgagcatgtttgagaatcatc 15849875  T
Q  107 atctcagagcttccttattagcttacatttgttcactcccacatttagcagtaatgttatcaacttgatttctggtcattctt 189  Q
     || ||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  15849874 ctcccagagcttccttattagctaacatttgttcactcccacctttagcag-aatgtcatcaacttgatttctggtcattctt 15849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 21303984 - 21304044
Alignment:
Q  189 taaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||| ||||    
T  21303984 taaagatgattgaattatatttctttcc-cctcttatgttaaaatatacacttccctcccct 21304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 15848154 - 15848087
Alignment:
Q  186 tcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||||   | ||||||||||||||||||| ||| | ||||| |||||||    
T  15848154 tcttaaagatgattgaattatactcct---cccctcttatgttaaaatatatacttctcttcctttgaaaa 15848087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 31846469 - 31846528
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||| ||| |  ||| |||||||||||||||||||||||||||||||||    
T  31846469 aaagatgattgaattacacttccctcc-cctcttatgttaaaatatacactccccttccct 31846528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 8437917 - 8437979
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccctt 251  Q
    ||||||||| |||||||| |||||  ||||| |||||||||||||||||||||||||| |||||    
T  8437917 ttaaagatgtttgaattacactccactcctc-tcttatgttaaaatatacactcccctcccctt 8437979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 34923861 - 34923922
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||| |||||||||||||| | |||| |||||||||||||||||||||||||| ||||    
T  34923861 cttaaagatgcttgaattatactccct-cctc-tcttatgttaaaatatacactcccctcccct 34923922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 40791810 - 40791756
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  40791810 aaagatgcttgaattacactcctctcc-cctcttatgttaaaatatacactcccct 40791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 13421488 - 13421522
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  13421488 ctcctcttatgttaaaatatacactcccctcccct 13421522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 14094205 - 14094141
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||| |||||||||| |||||||||||    
T  14094205 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatttacactcccc-tcccttgaaaa 14094141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 17564717 - 17564754
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  17564717 cctcttatgttaaaatatacactcccc-tcccttgaaaa 17564754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 30353864 - 30353925
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||| |||||||| ||| | ||| |||||||||||||||||||||||| |||| ||||    
T  30353864 ttaaagatgcttgaattacacttccttc-tcctcttatgttaaaatatacacttccctcccct 30353925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 40791068 - 40791132
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||||||||   ||| ||||||||||||||||||||||| ||| |||||||||||    
T  40791068 aaagatgtttgaattatactctcctcc-cctcttatgttaaaatatacactaccc-tcccttgaaaa 40791132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 3075328 - 3075380
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccc 243  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||    
T  3075328 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactccc 3075380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 34925432 - 34925396
Alignment:
Q  219 ctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34925432 ctcttatgttaaaatatacactcccc-tcccttgaaaa 34925396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 41312437 - 41312381
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||||| |||||||| |||||  ||| ||||||||||||||||||||| ||||||    
T  41312437 ttaaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacattcccct 41312381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 43764100 - 43764160
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccctt 251  Q
    ||||||| |||||||| ||| || ||| |||||||||||||||||||||||| ||| |||||    
T  43764100 aaagatgtttgaattacacttctctcc-cctcttatgttaaaatatacactctcctcccctt 43764160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 44746869 - 44746840
Alignment:
Q  216 ctcctcttatgttaaaatatacactcccct 245  Q
    ||||||||||||||||||||||||||||||    
T  44746869 ctcctcttatgttaaaatatacactcccct 44746840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 8442678 - 8442737
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||  |||| |||||||||||||||||||||| ||||| ||||    
T  8442678 aaagatgcttgaattacactctcttcc-cctcttatgttaaaatatacacacccctaccct 8442737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 11140143 - 11140175
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  11140143 cctcttatgttaaaatatacactcccctcccct 11140175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 12336322 - 12336283
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  12336322 ctcctcttatgttaaaatatacacttccc-tcccttgaaaa 12336283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 14880243 - 14880184
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||| |||| ||||    
T  14880243 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacacttccctcccct 14880184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 17565393 - 17565342
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||| || ||||| |||||| ||| |||||||||||||||||||||||||    
T  17565393 aaagatgcttcaattacactcctctcc-cctcttatgttaaaatatacactcc 17565342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 22934311 - 22934370
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  22934311 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 22934370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 25485481 - 25485422
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  25485481 aaagatgtttgaattacactcccctcc-cctcttaagttaaaatatacactcccctaccct 25485422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 31739558 - 31739590
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  31739558 cctcttatgttaaaatatacactcccctcccct 31739590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 1364111 - 1364042
Alignment:
Q  185 ttcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaa 255  Q
    |||| ||||||| |||||||| |||||  || ||||||||||||||||||||||||||||| |||||||||    
T  1364111 ttctcaaagatgtttgaattacactcccatc-tcctcttatgttaaaatatacactcccctccccttgaaa 1364042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 23682013 - 23682077
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  23682013 aaagatgcttgagttatactcctctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 23682077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 24054250 - 24054314
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  24054250 aaagatgcttgagttatactcctctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 24054314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 47794709 - 47794641
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||| |||||||| |||||  || |||||||||||||||||||||| ||||| |||||||||||    
T  47794709 cttaaagatgtttgaattacactcccctc-tcctcttatgttaaaatatacattccccctcccttgaaaa 47794641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 2756661 - 2756604
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcc 248  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||||||    
T  2756661 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactccccttcc 2756604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 18364652 - 18364716
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||||||    
T  18364652 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 18364716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 41587357 - 41587301
Alignment:
Q  198 ttgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  41587357 ttgaattacactcctctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 41587301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 18365335 - 18365276
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  18365335 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 18365276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 4558051 - 4558113
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  4558051 cttaaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 4558113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 11345413 - 11345359
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  11345413 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccct 11345359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 11581855 - 11581917
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||| |||||||| | | || ||| |||||||||||||||||||||||||||| ||||    
T  11581855 cttaaagatgtttgaattacatttctctcc-cctcttatgttaaaatatacactcccctcccct 11581917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 291158 - 291195
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  291158 cctcttatgttaaaatatacactcccc-tcccttgaaaa 291195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 3090445 - 3090408
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3090445 cctcttatgttaaaatatacactcccc-tcccttgaaaa 3090408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 17764989 - 17764952
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  17764989 cctcttatgttaaaatatacactcccc-tcccttgaaaa 17764952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 19066309 - 19066272
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19066309 cctcttatgttaaaatatacactcccc-tcccttgaaaa 19066272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 54403581 - 54403645
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||| ||| |||||||||||    
T  54403581 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacacttccc-tcccttgaaaa 54403645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 54605787 - 54605847
Alignment:
Q  193 gatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaa 255  Q
    |||| |||||||| |||||  ||| ||||||||||||||||||||||||||| ||||||||||    
T  54605787 gatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccc-tcccttgaaa 54605847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 54606453 - 54606419
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  54606453 ctcctcttatgttaaaatatacactcccctcccct 54606419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 25480546 - 25480598
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    |||||||||| ||||||||||||||  ||| | |||||||||||||||||||||    
T  25480546 cttaaagatgcttgaattatactcccctcc-catcttatgttaaaatatacact 25480598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 49765183 - 49765120
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaa 255  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  49765183 aaagatgtttgaattacactcccctcc-cctcttatgttaaaatatacattcccc-tcccttgaaa 49765120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 53490757 - 53490721
Alignment:
Q  219 ctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| |||||||||||    
T  53490757 ctcttatgttaaaatatacactcccc-tcccttgaaaa 53490721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 3089799 - 3089831
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  3089799 cctcttatgttaaaatatacactcccctcccct 3089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 5963106 - 5963138
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  5963106 cctcttatgttaaaatatacactcccctcccct 5963138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 10887732 - 10887791
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  10887732 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 10887791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 37183100 - 37183159
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  37183100 aaagatgtttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 37183159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 40927542 - 40927574
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  40927542 cctcttatgttaaaatatacactcccctcccct 40927574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 49080636 - 49080604
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  49080636 cctcttatgttaaaatatacactcccctcccct 49080604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 53490071 - 53490129
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||| | |||| |||||||||||||||||||||| ||||||||||    
T  53490071 aaagatgcttgaattacacttcattcc-cctcttatgttaaaatatacac-ccccttccct 53490129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 4438033 - 4437976
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcc 248  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  4438033 aaagatgtttgaattacactcctctcc-cctcttatgttaaaatatacactccccttcc 4437976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 37009714 - 37009650
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| || ||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  37009714 aaagatgcttaaattacactcctctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 37009650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 37199654 - 37199590
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||||||    
T  37199654 aaagatgtttgaattacactcccctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 37199590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 17829070 - 17829129
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  17829070 aaagatgcttgaattacactccactcc-cctcttatgttaaaatatacactcccctcccct 17829129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 37329745 - 37329783
Alignment:
Q  217 tcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37329745 tcctcttatgttaaaatatacactcccc-tcccttgaaaa 37329783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 3044974 - 3045004
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcc 248  Q
    |||||||||||||||||||||||||||||||    
T  3044974 cctcttatgttaaaatatacactccccttcc 3045004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 6229912 - 6229875
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6229912 cctcttatgttaaaatatacactcccc-tcccttgaaaa 6229875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 10357177 - 10357116
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||| |||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  10357177 ttaatgatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 10357116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 33146081 - 33146118
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  33146081 cctcttatgttaaaatatacactcccc-tcccttgaaaa 33146118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 34173768 - 34173704
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||| ||||| |||||||||||    
T  34173768 aaagatgtttgaattacactcccctcc-cctcttatgttaaaatatacattcccc-tcccttgaaaa 34173704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 38910690 - 38910743
Alignment:
Q  186 tcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    ||||||||||| |||||||| |||||  ||||| |||||||||||||||||||||    
T  38910690 tcttaaagatgtttgaattacactcccctcctc-tcttatgttaaaatatacact 38910743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 11942995 - 11942943
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    |||||||||| ||||||||||||| | || |||| |||||||||||||||||||    
T  11942995 cttaaagatgtttgaattatactcatctc-tccttttatgttaaaatatacact 11942943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 13874042 - 13873990
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactc 241  Q
    ||||||||| |||||||| |||| | ||||| ||||||||||||||||||||||    
T  13874042 ttaaagatgtttgaattacactcttctcctc-tcttatgttaaaatatacactc 13873990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 14014167 - 14014115
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactc 241  Q
    ||||||||| |||||||| |||| | ||||| ||||||||||||||||||||||    
T  14014167 ttaaagatgtttgaattacactcttctcctc-tcttatgttaaaatatacactc 14014115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 4437358 - 4437390
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||||||||||||||| |||||||||||    
T  4437358 cctcttatgttaaaatatacaatccccttccct 4437390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 5474670 - 5474702
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  5474670 cctcttatgttaaaatatacactcccctcccct 5474702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 15006476 - 15006508
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  15006476 cctcttatgttaaaatatacactcccctcccct 15006508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 20894335 - 20894276
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  20894335 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 20894276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 33146730 - 33146698
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  33146730 cctcttatgttaaaatatacactcccctcccct 33146698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 34173092 - 34173124
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  34173092 cctcttatgttaaaatatacactcccctcccct 34173124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 35175668 - 35175700
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  35175668 cctcttatgttaaaatatacactcccctcccct 35175700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 37198970 - 37199002
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  37198970 cctcttatgttaaaatatacactcccctcccct 37199002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 41521695 - 41521663
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  41521695 cctcttatgttaaaatatacactcccctcccct 41521663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 43439828 - 43439789
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  43439828 ctcctcttatgttaaaatatacactctcc-tcccttgaaaa 43439789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 32867957 - 32867898
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||| ||||    
T  32867957 aaagatgcttgaattacactcctctcc-cctcttatgttaaaatatacactcccctcccct 32867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 40401606 - 40401542
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||| |||||||||||||||    
T  40401606 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacact-cccttcccttgaaaa 40401542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 14078376 - 14078435
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||  |||| |||||||||||||||||||||||||||| ||||    
T  14078376 aaagatgcttgaattaaactctcttcc-cctcttatgttaaaatatacactcccctcccct 14078435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 14388404 - 14388463
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||  |||| |||||||||||||||||||||||||||| ||||    
T  14388404 aaagatgcttgaattaaactctcttcc-cctcttatgttaaaatatacactcccctcccct 14388463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 16426050 - 16426000
Alignment:
Q  204 tatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  16426050 tatactcccttcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 16426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 28308700 - 28308661
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  28308700 ctcctcttatgttaaaatatacactcccc-tcccttgaaaa 28308661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 25607669 - 25607607
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  25607669 cttaaagatgtttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 25607607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 2935815 - 2935766
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    ||||||| |||||||| ||||| |||| |||||||||||||||||||||||    
T  2935815 aaagatgcttgaattacactcccttcc-cctcttatgttaaaatatacact 2935766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 20261609 - 20261572
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  20261609 cctcttatgttaaaatatacactcccc-tcccttgaaaa 20261572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 31221510 - 31221446
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| | ||||||||||||||||||||||||| |||||||||||    
T  31221510 aaagatgcttgaattacactcccctcc-cttcttatgttaaaatatacactcccc-tcccttgaaaa 31221446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 33869238 - 33869272
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||||| ||||    
T  33869238 ctcctcttatgttaaaatatacactcccctcccct 33869272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 36687313 - 36687369
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccc 244  Q
    |||||||||| |||||||| ||| |  ||| |||||||||||||||||||||||||||    
T  36687313 cttaaagatgcttgaattacacttccctcc-cctcttatgttaaaatatacactcccc 36687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 36848555 - 36848503
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    |||||||||| |||||||| |||| | || ||||||||||||||||||||||||    
T  36848555 cttaaagatgcttgaattacactcttctc-tcctcttatgttaaaatatacact 36848503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 48872059 - 48872095
Alignment:
Q  219 ctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| |||||||||||    
T  48872059 ctcttatgttaaaatatacactcccc-tcccttgaaaa 48872095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 25276 - 25335
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  25276 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 25335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 317298 - 317357
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  317298 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 317357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 14753906 - 14753878
Alignment:
Q  216 ctcctcttatgttaaaatatacactcccc 244  Q
    |||||||||||||||||||||||||||||    
T  14753906 ctcctcttatgttaaaatatacactcccc 14753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 19156130 - 19156071
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||| | ||| ||||||||||||||||||||||| |||| ||||    
T  19156130 aaagatgtttgaattacactcatctcc-cctcttatgttaaaatatacacttccctcccct 19156071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 20755529 - 20755470
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||| | ||| ||||||||||||||||||||||| |||| ||||    
T  20755529 aaagatgtttgaattacactcatctcc-cctcttatgttaaaatatacacttccctcccct 20755470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 27144228 - 27144260
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  27144228 cctcttatgttaaaatatacactcccctcccct 27144260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 27144897 - 27144842
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccc 244  Q
    ||||||||| |||||||| |||| | || || |||||||||||||||||||||||||    
T  27144897 ttaaagatgcttgaattacactcttctc-tcttcttatgttaaaatatacactcccc 27144842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 27619688 - 27619637
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||    
T  27619688 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcc 27619637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 34999232 - 34999264
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  34999232 cctcttatgttaaaatatacactcccctcccct 34999264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 36847879 - 36847911
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  36847879 cctcttatgttaaaatatacactcccctcccct 36847911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 38987772 - 38987823
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||    
T  38987772 aaagatgcttgaattaaactcccctcc-cctcttatgttaaaatatacactcc 38987823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 48982566 - 48982534
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  48982566 cctcttatgttaaaatatacactcccctcccct 48982534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 35751536 - 35751595
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||| ||||    
T  35751536 aaagatgcttgaattacactcccttcc-cctcttatgttaaaatatacactcccctcccct 35751595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 36737506 - 36737439
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||| |||||||| |||||  ||| ||||||||||||||||||||||| ||| |||||||||||    
T  36737506 cttaaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacacttccc-tcccttgaaaa 36737439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 9118851 - 9118906
Alignment:
Q  186 tcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||||||| |||||||| ||||| ||||| |||||| |||||||||||||||||    
T  9118851 tcttaaagatgtttgaattacactcccttcct-ctcttaagttaaaatatacactcc 9118906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 19408559 - 19408618
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  19408559 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 19408618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 20183380 - 20183439
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| | |||||||||||||||||||||||||||||||    
T  20183380 aaagatgcttgaattacactcccctcc-cttcttatgttaaaatatacactccccttccct 20183439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 15144432 - 15144486
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  15144432 aaagatgtttgaattatattcctttcatc-tcttatgttaaaatatacacttccct 15144486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 20570150 - 20570207
Alignment:
Q  192 agatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||| |||||||| |||||  ||||| |||||||||||||||||||||||||| ||||    
T  20570150 agatgcttgaattacactcccctcctc-tcttatgttaaaatatacactcccctcccct 20570207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 27979251 - 27979315
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||| ||||| |||||||||||    
T  27979251 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacattcccc-tcccttgaaaa 27979315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 1932076 - 1932025
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||| ||||||||||||||  ||||| ||||||||||||||||| |||||    
T  1932076 aaagatgtttgaattatactcccctcctc-tcttatgttaaaatatatactcc 1932025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 4877402 - 4877370
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  4877402 cctcttatgttaaaatatacactcccctcccct 4877370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 9017667 - 9017726
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||| |||| ||||    
T  9017667 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacacttccctcccct 9017726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 21639038 - 21639097
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||| ||| ||||    
T  21639038 aaagatgcttgaattacactccactcc-cctcttatgttaaaatatacactctcctcccct 21639097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 27028699 - 27028644
Alignment:
Q  186 tcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||||||| |||||||| |||||  ||||| ||||||||||||||||| |||||    
T  27028699 tcttaaagatgcttgaattacactcccctcctc-tcttatgttaaaatatatactcc 27028644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 36742609 - 36742577
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  36742609 cctcttatgttaaaatatacactcccctcccct 36742577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 37708795 - 37708854
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||||||||||||| ||||    
T  37708795 aaagatgcttgaattacactcctctcc-cctcttatgttaaaatatacactcccctcccct 37708854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 17722768 - 17722829
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  17722768 ttaaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 17722829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 45847825 - 45847768
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    |||||||||| |||||||| | |||| ||||| ||||||||||||||||||||||||||    
T  45847825 cttaaagatgcttgaattacaatcctctcctc-tcttatgttaaaatatacactcccct 45847768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 755581 - 755522
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| ||||||||||||||  ||| |||||||| |||||||||||||| |||||||||    
T  755581 aaagatgcttgaattatactcccctcc-cctcttatattaaaatatacacttcccttccct 755522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 26705724 - 26705665
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||||| |||||||||||||||||||||||||| ||||    
T  26705724 aaagatgcttgaattacactcccctcctc-tcttatgttaaaatatacactcccctcccct 26705665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 35667338 - 35667279
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  35667338 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 35667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 754888 - 754938
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactc 241  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||||||||||||    
T  754888 aaagatgcttgaattacactcctctcc-cctcttatgttaaaatatacactc 754938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 16192370 - 16192316
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||||  ||||| ||||||||||||||||||||||||||    
T  16192370 aaagatgcttgaattacactcccctcctc-tcttatgttaaaatatacactcccct 16192316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 41919963 - 41919909
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||    
T  41919963 aaagatgcttgaattacactcttctcctc-tcttatgttaaaatatacactcccct 41919909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 55068863 - 55068917
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  55068863 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccct 55068917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 13482230 - 13482267
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  13482230 cctcttatgttaaaatatacactcccc-tcccttgaaaa 13482267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 23722106 - 23722042
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||| ||| |||||||||||    
T  23722106 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactaccc-tcccttgaaaa 23722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 35665972 - 35666021
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    ||||||| |||||||||||| || ||||| |||||||||||||||||||||    
T  35665972 aaagatgcttgaattatacttctctcctc-tcttatgttaaaatatacact 35666021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 35667811 - 35667758
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccc 244  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||    
T  35667811 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccc 35667758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 37147767 - 37147823
Alignment:
Q  198 ttgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||| |||||| ||| ||||||||||||||||||||||| ||| |||||||||||    
T  37147767 ttgaattacactcctctcc-cctcttatgttaaaatatacacttccc-tcccttgaaaa 37147823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 721342 - 721401
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||| |||||||||||||| |||||||||    
T  721342 aaagatgcttgaattacactcccctcc-cctcttatattaaaatatacacttcccttccct 721401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 796403 - 796462
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  796403 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 796462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 4949956 - 4950018
Alignment:
Q  192 agatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||| |||||||| |||||  ||||| ||||||||||||||||||||| |||||||||| ||||    
T  4949956 agatgtttgaattacactcccctcctc-tcttatgttaaaatatacact-cccttcccttaaaaa 4950018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 8193045 - 8192986
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  8193045 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 8192986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 16960252 - 16960284
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  16960252 cctcttatgttaaaatatacactcccctcccct 16960284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 16960921 - 16960878
Alignment:
Q  198 ttgaattatactcctttcctcctcttatgttaaaatatacactcc 242  Q
    ||||||||||||||  || ||||||||||||||||||||||||||    
T  16960921 ttgaattatactcccctc-tcctcttatgttaaaatatacactcc 16960878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 33047287 - 33047232
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccc 243  Q
    ||||||| || |||||||| |||||  ||| ||||||||||||||||||||||||||    
T  33047287 cttaaagttgtttgaattacactcccctcc-cctcttatgttaaaatatacactccc 33047232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 36898129 - 36898090
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  36898129 ctccttttatgttaaaatatacactcccc-tcccttgaaaa 36898090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 7448937 - 7448891
Alignment:
Q  198 ttgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7448937 ttgaattacactcctttcc-cctcttatgttaaaatatacactcccct 7448891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 11794824 - 11794763
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||| |||||||| |||||  ||| |||||||||||||||| ||||||||||||||||    
T  11794824 ttaaagatggttgaattacactcccatcc-cctcttatgttaaaatttacactccccttccct 11794763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 12026252 - 12026193
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||||||| ||||    
T  12026252 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccctcccct 12026193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 12693865 - 12693924
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||| || || ||||||||||||||||||||||||||||| ||||    
T  12693865 aaagatgcttgaattacacttctctc-tcctcttatgttaaaatatacactcccctcccct 12693924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 10702989 - 10702925
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| ||| || ||| ||||||||||||||||||||||| ||| |||||||||||    
T  10702989 aaagatgcttgaattacacttctctcc-cctcttatgttaaaatatacacttccc-tcccttgaaaa 10702925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 21802632 - 21802595
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  21802632 cctcttatgttaaaatatacactcccc-tcccttgaaaa 21802595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 32114462 - 32114398
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| ||| || || |||||||||||||||||||||||||| | |||||||||||    
T  32114462 aaagatgcttgaattacacttctctc-tcctcttatgttaaaatatacactcctc-tcccttgaaaa 32114398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 32522560 - 32522499
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||| |||||||| |||| | || || ||||||||||||||||||||| |||||||||    
T  32522560 ttaaagatgtttgaattacactcatctcatc-tcttatgttaaaatatacacttcccttccct 32522499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 188490 - 188434
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||||| |||||||| |||||  ||| ||||||| ||||||||||||||||||||    
T  188490 ttaaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccct 188434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 15499523 - 15499487
Alignment:
Q  219 ctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15499523 ctcttatgttaaaatatacactcccc-tcccttgaaaa 15499487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 4100561 - 4100593
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  4100561 cctcttatgttaaaatatacactcccctcccct 4100593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 4125923 - 4125955
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  4125923 cctcttatgttaaaatatacactcccctcccct 4125955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 10702317 - 10702349
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  10702317 cctcttatgttaaaatatacactcccctcccct 10702349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 11522819 - 11522878
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  11522819 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 11522878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 12033172 - 12033113
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  12033172 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 12033113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 14313904 - 14313845
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||| |||||| ||||    
T  14313904 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacaatcccctcccct 14313845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 32113785 - 32113817
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  32113785 cctcttatgttaaaatatacactcccctcccct 32113817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 32130982 - 32131014
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||||||||||||||||| |||||||||    
T  32130982 cctcttatgttaaaatatacacttcccttccct 32131014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 32521863 - 32521902
Alignment:
Q  198 ttgaattatactcctttcctcctcttatgttaaaatataca 238  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  32521863 ttgaattacactcctttcc-cctcttatgttaaaatataca 32521902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 34794579 - 34794528
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacact 240  Q
    ||||||||| |||||||| |||||  ||| |||||||||||||||||||||||    
T  34794579 ttaaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacact 34794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 8061042 - 8061104
Alignment:
Q  187 cttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||| |||||||| ||||   ||||| |||||||||||||||||||||||||||||||    
T  8061042 cttaaagatgcttgaattacactctcctcctc-tcttatgttaaaatatacactccccttccct 8061104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 16536391 - 16536455
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||| |||||||||||    
T  16536391 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 16536455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 18406547 - 18406613
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||| |||||||| |||||  ||||| ||||||||||||||||||||| ||| |||||||||||    
T  18406547 ttaaagatgcttgaattacactcccctcctc-tcttatgttaaaatatacactaccc-tcccttgaaaa 18406613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 31765351 - 31765417
Alignment:
Q  186 tcttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||  ||||||| |||||||||||   |||||||| ||||||||||||||| |||||||||||    
T  31765351 tcttaaagatgcatgaattacactcctttcct---cttatgttcaaatatacactcccc-tcccttgaaaa 31765417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 45738725 - 45738666
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||    
T  45738725 aaagatgcttgaattacactcctctcc-cctcttatgttaaaatatacacttccctcccct 45738666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 247
Target Start/End: Original strand, 46682719 - 46682750
Alignment:
Q  216 ctcctcttatgttaaaatatacactccccttc 247  Q
    ||||||||||||||||||||||||||||||||    
T  46682719 ctcctcttatgttaaaatatacactccccttc 46682750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 28044498 - 28044555
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcc 248  Q
    ||||||| |||||||||||||| ||| || | |||||||||||||||||||| ||||||    
T  28044498 aaagatgcttgaattatactcccttcgtctt-ttatgttaaaatatacactctccttcc 28044555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 29510535 - 29510474
Alignment:
Q  188 ttaaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||||| |||||||| |||||  | | |||||||||||||||||||||||||||| ||||    
T  29510535 ttaaagatgtttgaattacactccccttc-cctcttatgttaaaatatacactcccctcccct 29510474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 45559819 - 45559762
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcc 248  Q
    ||||||| |||||||| |||||  || |||||||||||||||||||||| |||||||||    
T  45559819 aaagatgcttgaattacactcccatc-tcctcttatgttaaaatatacaatccccttcc 45559762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 45737324 - 45737388
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||||||||||| || |||||||||||    
T  45737324 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatatacactctcc-tcccttgaaaa 45737388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 17109352 - 17109388
Alignment:
Q  219 ctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||||||||||||||||||||| |||||||||||    
T  17109352 ctcttatgttaaaatatacactcccc-tcccttgaaaa 17109388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 45195266 - 45195233
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccctt 251  Q
    |||||||||||||||||||||||||||| |||||    
T  45195266 cctcttatgttaaaatatacactcccctcccctt 45195233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 19072413 - 19072354
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||||| |||||| ||||||||||||||||||| ||||    
T  19072413 aaagatgtttgaattacactcccctcctc-tcttatattaaaatatacactcccctcccct 19072354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 19120303 - 19120244
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||||| |||||| ||||||||||||||||||| ||||    
T  19120303 aaagatgtttgaattacactcccctcctc-tcttatattaaaatatacactcccctcccct 19120244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 41575193 - 41575252
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||| | | |||||||||||||||||| ||||||||| ||||    
T  41575193 aaagatgcttgaattacactcctcttc-cctcttatgttaaaatatgcactcccctcccct 41575252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 50143406 - 50143468
Alignment:
Q  192 agatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||| |||||||| |||||  ||| ||||||||||||||||||||| ||||| |||||||||||    
T  50143406 agatgtttgaattacactcccctcc-cctcttatgttaaaatatacattcccc-tcccttgaaaa 50143468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 12914 - 12855
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||  |||||| ||||||||||||||||||| |||||||||||    
T  12914 aaagatgtttgaattacactctcttcctc-tcttatgttaaaatatacattccccttccct 12855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 14763 - 14713
Alignment:
Q  204 tatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  14763 tatactcccttcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 14713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 28909 - 28859
Alignment:
Q  204 tatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  28909 tatactcccttcc-cctcttatgttaaaatatacactcccc-tcccttgaaaa 28859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 421167 - 421221
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactcccct 245  Q
    ||||||| |||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  421167 aaagatgtttgaattacactcccctcc-cctcttatgttaaaatatacactcccct 421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 421984 - 421925
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| ||||| |||| ||||||||||| ||||||||||| |||| ||||    
T  421984 aaagatgcttgaattacactcccttcc-cctcttatgtttaaatatacacttccctcccct 421925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 2243 - 2307
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||| |||||||| |||||  ||| |||||||||||||||| |||||||||| |||||||||||    
T  2243 aaagatgcttgaattacactcccctcc-cctcttatgttaaaatttacactcccc-tcccttgaaaa 2307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 11336 - 11373
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  11336 cctcttatgttaaaatatacactcccc-tcccttgaaaa 11373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 59307 - 59344
Alignment:
Q  218 cctcttatgttaaaatatacactccccttcccttgaaaa 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  59307 cctcttatgttaaaatatacactcccc-tcccttgaaaa 59344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 3455 - 3487
Alignment:
Q  218 cctcttatgttaaaatatacactccccttccct 250  Q
    |||||||||||||||||||||||||||| ||||    
T  3455 cctcttatgttaaaatatacactcccctcccct 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 15383 - 15324
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  || ||||||| |||||||||||| |||||||||||||    
T  15383 aaagatgcttgaattacactcccgtc-tcctcttttgttaaaatatagactccccttccct 15324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 19701 - 19642
Alignment:
Q  190 aaagatgattgaattatactcctttcctcctcttatgttaaaatatacactccccttccct 250  Q
    ||||||| |||||||| |||||  ||| ||||||| |||||||||||||||||||| ||||    
T  19701 aaagatgcttgaattacactcccctcc-cctcttaagttaaaatatacactcccctcccct 19642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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