View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_12 (Length: 275)
Name: NF4899_high_12
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 265
Target Start/End: Original strand, 19026652 - 19026875
Alignment:
| Q |
42 |
cgatacaaagccaaaatctaatattccaaattcacctataattaccaacaagaaatagtttaatttctaaggattaagagttccaaagcaatgtaacaac |
141 |
Q |
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| T |
19026652 |
cgatacaaagtcaaaatctaatattccaaattcacctataattaccaacaagaaatagtttaatttctaaggattaagagttccaaagcaatgtaacaac |
19026751 |
T |
|
| Q |
142 |
ctatgttaattccatgnnnnnnntgaatttaactaatttaaaatcctggtgaactaaaactcagttcataaagagtatattggattctttgtaatactag |
241 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19026752 |
ctatgttaattccatgaaaaaaatgaatttaactaatttaaaatcctggtgaactaaaactcagtacataaagagtatattggattctttgtaatactag |
19026851 |
T |
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| Q |
242 |
aaaggtgaattctactcacctatg |
265 |
Q |
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||| |||||||||||||||||||| |
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| T |
19026852 |
aaaagtgaattctactcacctatg |
19026875 |
T |
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