View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4899_high_14 (Length: 256)

Name: NF4899_high_14
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4899_high_14
NF4899_high_14
[»] chr4 (3 HSPs)
chr4 (9-131)||(53118536-53118664)
chr4 (209-241)||(4730661-4730693)
chr4 (209-241)||(24573822-24573854)
[»] chr2 (2 HSPs)
chr2 (209-241)||(28783900-28783932)
chr2 (209-237)||(19281822-19281850)
[»] chr8 (1 HSPs)
chr8 (209-240)||(42093521-42093552)
[»] chr5 (3 HSPs)
chr5 (209-240)||(32694705-32694736)
chr5 (209-240)||(39084245-39084276)
chr5 (209-240)||(40366354-40366385)
[»] chr3 (2 HSPs)
chr3 (209-240)||(54281624-54281655)
chr3 (209-237)||(21102698-21102726)
[»] chr1 (3 HSPs)
chr1 (209-240)||(30856189-30856220)
chr1 (209-240)||(39840609-39840640)
chr1 (209-240)||(41147210-41147241)
[»] chr7 (1 HSPs)
chr7 (209-237)||(8408087-8408115)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 53118536 - 53118664
Alignment:
Q  9 tccttccgaatattaagtcctaccatactctctatgtaagaaatgattttatttctcgattatgcgggatgcgtga------tgttatttattaaatgaa 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      | ||||||||  ||||||    
T  53118536 tccttcggaatattaagtcctaccatactctctatgtaagaaatgattttatttctcgattatgagggatgcgtgatattattattatttatagaatgaa 53118635  T
Q  103 aaagaataaaggaaacataaaatcccttc 131  Q
    |||||||||||||||||||||||||||||    
T  53118636 aaagaataaaggaaacataaaatcccttc 53118664  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 4730661 - 4730693
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcatc 241  Q
    |||||||||||||||| ||||||||||||||||    
T  4730661 ttgtttgaaaaaggtctctgaccccacttcatc 4730693  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 24573822 - 24573854
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcatc 241  Q
    |||||||||||||||||||| ||||||||||||    
T  24573822 ttgtttgaaaaaggtccctggccccacttcatc 24573854  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 28783900 - 28783932
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcatc 241  Q
    |||||||||||||||||||||||||||||||||    
T  28783900 ttgtttgaaaaaggtccctgaccccacttcatc 28783932  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 19281822 - 19281850
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccactt 237  Q
    |||||||||||||||||||||||||||||    
T  19281822 ttgtttgaaaaaggtccctgaccccactt 19281850  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 42093521 - 42093552
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  42093521 ttgtttgaaaaaggtccctgaccccacttcat 42093552  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 32694736 - 32694705
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  32694736 ttgtttgaaaaaggtccctgaccccacttcat 32694705  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 39084276 - 39084245
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  39084276 ttgtttgaaaaaggtccctgaccccacttcat 39084245  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 40366354 - 40366385
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  40366354 ttgtttgaaaaaggtccctgaccccacttcat 40366385  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 54281655 - 54281624
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  54281655 ttgtttgaaaaaggtccctgaccccacttcat 54281624  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 21102698 - 21102726
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccactt 237  Q
    |||||||||||||||||||||||||||||    
T  21102698 ttgtttgaaaaaggtccctgaccccactt 21102726  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 30856189 - 30856220
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  30856189 ttgtttgaaaaaggtccctgaccccacttcat 30856220  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 39840609 - 39840640
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  39840609 ttgtttgaaaaaggtccctgaccccacttcat 39840640  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 41147241 - 41147210
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccacttcat 240  Q
    ||||||||||||||||||||||||||||||||    
T  41147241 ttgtttgaaaaaggtccctgaccccacttcat 41147210  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 8408087 - 8408115
Alignment:
Q  209 ttgtttgaaaaaggtccctgaccccactt 237  Q
    |||||||||||||||||||||||||||||    
T  8408087 ttgtttgaaaaaggtccctgaccccactt 8408115  T

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