View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_18 (Length: 245)
Name: NF4899_high_18
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9691364 - 9691138
Alignment:
| Q |
1 |
caagttttcatcatcatt-actctttct---caaatgcctcttttcaattgacaaggtgagttcattaataggcttcatttctaagttagaccaagtttt |
96 |
Q |
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| T |
9691364 |
caagttttcatcatcatttactctttcttctcaaactcctcttttcaattgacaaggtgagttcattaataggattcatttctaagttagaccaagtttt |
9691265 |
T |
|
| Q |
97 |
gttctgaatgggaataatgaaagtatgtgaaggtgagaactagtgtttgagaaaccaatagtcagaataacataatttaagagagtttaggaattgtttg |
196 |
Q |
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| T |
9691264 |
gttgtgaatggaaataatgaatgtatgtgaaggtgagaactagtgtttgagaaactaatggtcggaataacatga-ttaagagagtttaggaattgtttg |
9691166 |
T |
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| Q |
197 |
aattaatgaatttatacctaatcattat |
224 |
Q |
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|||||||| |||||| |||||||||||| |
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| T |
9691165 |
aattaatggatttatgcctaatcattat |
9691138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 1933562 - 1933720
Alignment:
| Q |
39 |
tttcaattgacaaggtgagttcattaataggcttcatttctaagttagaccaagttttgttctgaatgggaataatgaaagtatgtgaaggtgagaacta |
138 |
Q |
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||||||||||| |||||||||| ||||||||||| |||| |||||||| | |||||||||| |||| |||||||||||| | |||||| ||||||||| | |
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| T |
1933562 |
tttcaattgacgaggtgagttctttaataggctttatttttaagttaggctaagttttgttgtgaacgggaataatgaatgcatgtgatggtgagaacga |
1933661 |
T |
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| Q |
139 |
gtgtttgagaaaccaatagtcagaataacataatttaagagagtttaggaattgtttgaatt |
200 |
Q |
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| T |
1933662 |
gggtttgagaaaccaatgataggaataacataattaaa---agtttaggaattgtgtgaatt |
1933720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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