View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_25 (Length: 226)
Name: NF4899_high_25
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 50421789 - 50421569
Alignment:
| Q |
6 |
aagattcaatcgatgcgatctgcctctcgtcctgctccaaacatttcccctctgcaagttaaccaaactaccatcgaactataccaatcaaatacaaatg |
105 |
Q |
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| T |
50421789 |
aagattcaatcgatgcgatctgcctctcgtcctgctccaaacatttcccctctgcaagttaaccaaactaccatcgaactataccaatcaaatacaactg |
50421690 |
T |
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| Q |
106 |
aaatggaggaagaaacacatggatcagaaggtccacgacatgcagatgcaagaacaaaggatcaaagtacaattctgcaggtattggatgctttgcaaaa |
205 |
Q |
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| T |
50421689 |
aaatggaggaagaaacacatggatcagaaggtccacgacatgcagatgcaagaacaaatgatcaaagtacaattctgcaggtattggatgctttgcaaaa |
50421590 |
T |
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| Q |
206 |
gctgcagggaagagtcactca |
226 |
Q |
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| T |
50421589 |
gctgcagggaagcgtcactca |
50421569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 50441940 - 50441851
Alignment:
| Q |
6 |
aagattcaatcgatgcgatctgcctctcgtcctgctccaaacatttcccctctgcaagttaaccaaactaccatcgaactataccaatca |
95 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| ||||||| | |||||||| |
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| T |
50441940 |
aagattcaatcgatgcgatctgcttctcgtcctgctccgaacatttcccctctacaagttagtcaaactactatcgaacaagaccaatca |
50441851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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