View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_3 (Length: 499)
Name: NF4899_high_3
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 66 - 477
Target Start/End: Complemental strand, 2183023 - 2182612
Alignment:
| Q |
66 |
tgatttctcccaattcttctacacagtcaaatgcaatggattgagcattaatattgcaggaataaatcatgatatcttttaacagtttgaaccggaaagt |
165 |
Q |
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| T |
2183023 |
tgatttctcctaattcttttagacagtcaaatgcaatggattgaacatttatattgcaggaataaatcatgaaatctgttaacagcttgaacctaaaagt |
2182924 |
T |
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| Q |
166 |
tgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaacaaaac |
265 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||| | |
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| T |
2182923 |
tgacacttacttcggttggagtcattgttccgggaatgtataaaatgtcaccaccttgaacataattcaaaatatcctgataaagaagtt-aaacaaagc |
2182825 |
T |
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| Q |
266 |
tgcatattggtaagacatcctagtatggcctcaaatacggaaatatgagattcaacaat-gcaaaagccaattctaacaacaataattattataaagtaa |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| ||||| || ||| ||||||||||||| |||||||||||| |
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| T |
2182824 |
tgcatattggtaagacatcctagtatggcctcaaatactgaaatttgacagtcaataatctcaaaatcccattttaacaacaataataattataaagtaa |
2182725 |
T |
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| Q |
365 |
atgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagctccggcgttaattgcagtttttgcatcctcaatcctgagaacagttc |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2182724 |
atgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagccccggctttaattgcagtttttgcatcctcaatcctgagaacagttc |
2182625 |
T |
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| Q |
465 |
caacctaagggca |
477 |
Q |
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| T |
2182624 |
caacctaagggca |
2182612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 3574441 - 3574329
Alignment:
| Q |
161 |
aaagttgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaac |
260 |
Q |
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|||||||| |||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||| |
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| T |
3574441 |
aaagttgaaactttcttcagttggagtcattgtccgggggatatataaaatttcaccaccttgaacatagtccaaaatatattgat-aacaagttaaaac |
3574343 |
T |
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| Q |
261 |
aaaactgcatattg |
274 |
Q |
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| T |
3574342 |
aagactgcatattg |
3574329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 3574197 - 3574140
Alignment:
| Q |
360 |
agtaaatgtaaataaaatttcaaaccttaacatttgcaggactcattagaaatttagc |
417 |
Q |
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||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
3574197 |
agtaaatgtaaataaaaattcaaacctcaacaattgcaggactcattagaaatttagc |
3574140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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