View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_6 (Length: 392)
Name: NF4899_high_6
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 27028118 - 27027736
Alignment:
| Q |
1 |
ttaagaatattttacactgttaatgtagtttattttgctgattgagtagcaagtcgggcaatcgagttgaagattctttcttccctaaatggaaaagtga |
100 |
Q |
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| T |
27028118 |
ttaagaatgttttaccctgttaatgtattttattttgctgattgagtagcaattcgtgcaatcgagttgaagaatcattcttccctcaatggaaaagtga |
27028019 |
T |
|
| Q |
101 |
taagggtcatgtggttaagtcgtgatgctgatgcaaggaagagtggcaaagggaatgtgtttgttaaggtatatgttatacattattacactatcttgct |
200 |
Q |
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| T |
27028018 |
taagggtcatgtggttaagtcgtgatgctgatgcaaggaagagtggcaaagggaatgtgtttgttaaggtatatgttatacattattacactatcttgct |
27027919 |
T |
|
| Q |
201 |
ttgatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagc |
300 |
Q |
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| T |
27027918 |
ttgatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaatatacagaacttagcagc |
27027819 |
T |
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| Q |
301 |
atccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgatgatg |
383 |
Q |
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| T |
27027818 |
atccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatg |
27027736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 41652980 - 41653064
Alignment:
| Q |
88 |
aatggaaaagtgataagggtcatgtggttaagtcgtgatgctgatgcaaggaagagtggcaaagggaatgtgtttgttaaggtat |
172 |
Q |
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| T |
41652980 |
aatggaaaagctattagggtgatgtggtcacgtcgtgatcctgatgcaaggaaaagttgtatagggaacgtgtttgttaaggtat |
41653064 |
T |
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