View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_8 (Length: 351)
Name: NF4899_high_8
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 111 - 351
Target Start/End: Complemental strand, 25773979 - 25773739
Alignment:
| Q |
111 |
atacctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctc |
210 |
Q |
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| T |
25773979 |
atacctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctc |
25773880 |
T |
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| Q |
211 |
aaaaacttagtataaacatcacaatttcctgctacacccaccaaccaaatcttcccaccataaacctctaataaccttgttaaccttgtaacaacaaaca |
310 |
Q |
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| T |
25773879 |
aaaaacttagtataaacatcacaatttcctgctacacccaccaaccaaatcttcccaccataaacctctaataaccttgttaaccttgaaacaacaaaca |
25773780 |
T |
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| Q |
311 |
caacaccatcatcaataacatcatcatcgttattgttcttc |
351 |
Q |
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| T |
25773779 |
caacaccatcatcaataacatcatcatcgttattgttcttc |
25773739 |
T |
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Back To:
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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 30107547 - 30107382
Alignment:
| Q |
113 |
acctggatttagagtatagtccttccatagaaggagtagcagatgtcacaggcaaaacatgcaaatccaaatctttttcaacattaggaaacaacctcaa |
212 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||| | | |||||||||| |||| || || ||| |||||||||||||| |
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| T |
30107547 |
acctggatttagagtagagtccttccattgaaggagtagcagatgtcacagtaaccaaatgcaaatcccaatccttctccacacccggaaacaacctcaa |
30107448 |
T |
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| Q |
213 |
aaacttagtataaacatcacaatttcctgctacacccaccaaccaaatcttcccaccataaacctc |
278 |
Q |
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|||||| | |||| | || | || | || ||||||| |||||||| |||| ||||||||||||| |
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| T |
30107447 |
aaacttcgaataagcctccgacgtttcagccacacccatcaaccaaaccttctcaccataaacctc |
30107382 |
T |
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