View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_high_9 (Length: 346)
Name: NF4899_high_9
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 27295016 - 27294704
Alignment:
| Q |
16 |
gcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtatattctcaaatcggggaattgagcctaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
27295016 |
gcacagattcaataggcataagccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtacattctcaagtcggggaattgagcctaa |
27294917 |
T |
|
| Q |
116 |
ctgaagctttttcagataatgcaatgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccct |
215 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27294916 |
ctgaagctttttcagataaggcaatgctccttcgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccct |
27294817 |
T |
|
| Q |
216 |
ccatcttgaaaatacaaacctaaaccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27294816 |
ccatcttgaaaatacaaacctaaaccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaacttttatacacgatagtcaaggtgatgg |
27294717 |
T |
|
| Q |
316 |
aagagtctattga |
328 |
Q |
| |
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||||||||||||| |
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| T |
27294716 |
aagagtctattga |
27294704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 30987770 - 30987922
Alignment:
| Q |
140 |
tgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccctccatcttgaaaatacaaacctaaa |
239 |
Q |
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||||||||||||||||||||||| | ||||||| ||| |||||| |||||| || |||||| || ||| || ||||||||||||||||| | | || |
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| T |
30987770 |
tgctcctttgtcgataataatatctgtcaattcatccgaagatccaatgtacagttcttttagtttcggaaaccatccatcttgaaaatacatatgtgaa |
30987869 |
T |
|
| Q |
240 |
ccttcataagctccagagtctatagaaaggatcaacaagtgttgcaaactttt |
292 |
Q |
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||| ||||||| ||| | ||||||| |||||||| ||||||||||||||||| |
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| T |
30987870 |
cctccataagcaccaacgcctatagagaggatcaataagtgttgcaaactttt |
30987922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 247
Target Start/End: Complemental strand, 21939241 - 21939032
Alignment:
| Q |
38 |
ccaaatatgaagaacttcaagcttctctatgtgttggatgccagtcggtatattct-caaatcggggaattgagcctaactgaagctttttcagataatg |
136 |
Q |
| |
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|||||||| ||| ||||||||||||||| ||||| |||||||| |||||||||| || || | || ||| | ||||| ||||||||| || || | |
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| T |
21939241 |
ccaaatatagagatcttcaagcttctctaagtgttcaatgccagtaggtatattcttcagattgaggggttgcac-taacttaagcttttttagggaagg |
21939143 |
T |
|
| Q |
137 |
caatgctcctttgtcgataataatatatctcaattccatcgagaatccaacgtacagctcctttagtctctgaatccctccatcttgaaaatacaaacct |
236 |
Q |
| |
|
|| || |||||||||||||||||| | ||||||| || | || ||| | ||| ||||||||| |||||| | ||||||| ||||||| ||||||| |
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| T |
21939142 |
cattgatcctttgtcgataataatttccttcaattcaatgcaacctctaacttccagttcctttagtttctgaaactctccatcatgaaaatgcaaacct |
21939043 |
T |
|
| Q |
237 |
aaaccttcata |
247 |
Q |
| |
|
||||||||||| |
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|
| T |
21939042 |
aaaccttcata |
21939032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 22036603 - 22036562
Alignment:
| Q |
52 |
cttcaagcttctctatgtgttggatgccagtcggtatattct |
93 |
Q |
| |
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||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
22036603 |
cttcaagcttctccaagtgttggatgccagtgggtatattct |
22036562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 22117171 - 22117130
Alignment:
| Q |
52 |
cttcaagcttctctatgtgttggatgccagtcggtatattct |
93 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||||| |
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|
| T |
22117171 |
cttcaagcttctccaagtgttggatgccagtgggtatattct |
22117130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 21932361 - 21932309
Alignment:
| Q |
195 |
tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata |
247 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
21932361 |
tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata |
21932309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 21947712 - 21947672
Alignment:
| Q |
53 |
ttcaagcttctctatgtgttggatgccagtcggtatattct |
93 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||||||| |
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|
| T |
21947712 |
ttcaagcttctccaagtgttggatgccagtgggtatattct |
21947672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 22029944 - 22029892
Alignment:
| Q |
195 |
tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata |
247 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
22029944 |
tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata |
22029892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 22106796 - 22106756
Alignment:
| Q |
53 |
ttcaagcttctctatgtgttggatgccagtcggtatattct |
93 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||||||| |
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| T |
22106796 |
ttcaagcttctccaagtgttggatgccagtgggtatattct |
22106756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 22188932 - 22188880
Alignment:
| Q |
195 |
tcctttagtctctgaatccctccatcttgaaaatacaaacctaaaccttcata |
247 |
Q |
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|
||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
22188932 |
tcctttagtttctgaaaccctccatcttgaaaatgcaattgtaaaccttcata |
22188880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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