View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4899_low_16 (Length: 249)

Name: NF4899_low_16
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4899_low_16
NF4899_low_16
[»] chr5 (15 HSPs)
chr5 (13-154)||(13127648-13127789)
chr5 (199-249)||(40643342-40643392)
chr5 (156-200)||(13127585-13127629)
chr5 (199-249)||(9268032-9268082)
chr5 (199-249)||(19571669-19571719)
chr5 (199-249)||(41418556-41418606)
chr5 (199-247)||(8283851-8283899)
chr5 (198-249)||(7940698-7940749)
chr5 (198-249)||(8144458-8144509)
chr5 (206-249)||(14619497-14619540)
chr5 (202-249)||(32964378-32964425)
chr5 (199-249)||(9065155-9065205)
chr5 (199-249)||(12807170-12807220)
chr5 (199-249)||(20142000-20142050)
chr5 (199-249)||(35547509-35547559)
[»] chr3 (14 HSPs)
chr3 (198-249)||(43408191-43408242)
chr3 (198-249)||(12906150-12906201)
chr3 (198-249)||(40919202-40919253)
chr3 (199-249)||(46845231-46845281)
chr3 (199-249)||(50433128-50433178)
chr3 (198-249)||(8322171-8322222)
chr3 (198-249)||(15996513-15996564)
chr3 (198-249)||(17753273-17753324)
chr3 (198-249)||(19054593-19054644)
chr3 (198-249)||(42801520-42801571)
chr3 (198-249)||(43686749-43686800)
chr3 (198-249)||(47067182-47067233)
chr3 (199-249)||(10656939-10656989)
chr3 (199-249)||(41992279-41992329)
[»] chr6 (6 HSPs)
chr6 (199-249)||(9342086-9342136)
chr6 (198-249)||(2090907-2090958)
chr6 (199-249)||(25045382-25045432)
chr6 (198-249)||(15355294-15355344)
chr6 (198-249)||(31091691-31091742)
chr6 (199-249)||(7772424-7772474)
[»] chr2 (17 HSPs)
chr2 (196-249)||(1748378-1748431)
chr2 (199-249)||(11865026-11865076)
chr2 (199-249)||(34944158-34944208)
chr2 (198-249)||(18374428-18374479)
chr2 (198-249)||(41004189-41004240)
chr2 (198-249)||(45628619-45628670)
chr2 (199-249)||(1142997-1143047)
chr2 (199-249)||(2200227-2200277)
chr2 (199-249)||(12970034-12970084)
chr2 (199-249)||(13336496-13336546)
chr2 (199-249)||(19034658-19034708)
chr2 (199-249)||(24345665-24345715)
chr2 (199-249)||(31751320-31751370)
chr2 (199-249)||(38214726-38214776)
chr2 (199-249)||(41834655-41834705)
chr2 (197-249)||(22182662-22182714)
chr2 (198-249)||(30466373-30466424)
[»] chr8 (6 HSPs)
chr8 (198-249)||(5162552-5162603)
chr8 (198-249)||(5783885-5783936)
chr8 (198-249)||(38967391-38967442)
chr8 (199-249)||(5774297-5774347)
chr8 (199-249)||(9035280-9035330)
chr8 (199-249)||(38780881-38780931)
[»] chr4 (11 HSPs)
chr4 (198-249)||(55562864-55562915)
chr4 (199-249)||(29460444-29460494)
chr4 (199-249)||(31937324-31937374)
chr4 (199-249)||(41191275-41191325)
chr4 (198-249)||(25123982-25124034)
chr4 (198-249)||(17339326-17339377)
chr4 (198-249)||(32898977-32899028)
chr4 (198-249)||(50450963-50451014)
chr4 (199-249)||(375672-375722)
chr4 (199-249)||(39879985-39880035)
chr4 (199-249)||(47683336-47683386)
[»] scaffold0161 (1 HSPs)
scaffold0161 (199-249)||(3685-3735)
[»] chr7 (7 HSPs)
chr7 (199-249)||(27881827-27881877)
chr7 (199-249)||(41444450-41444500)
chr7 (198-249)||(1574965-1575016)
chr7 (199-249)||(12930566-12930616)
chr7 (199-249)||(27529474-27529524)
chr7 (199-249)||(28016285-28016335)
chr7 (199-249)||(47323268-47323318)
[»] chr1 (17 HSPs)
chr1 (199-249)||(9715608-9715658)
chr1 (199-249)||(23530793-23530843)
chr1 (199-249)||(28888162-28888212)
chr1 (196-249)||(44529411-44529464)
chr1 (191-231)||(51422157-51422197)
chr1 (197-249)||(51561068-51561120)
chr1 (198-249)||(27530342-27530392)
chr1 (198-249)||(28885841-28885892)
chr1 (198-249)||(38261588-38261639)
chr1 (199-249)||(229147-229197)
chr1 (199-249)||(15892303-15892353)
chr1 (199-249)||(25284054-25284104)
chr1 (199-249)||(27037517-27037567)
chr1 (199-249)||(34931325-34931375)
chr1 (199-249)||(40614646-40614696)
chr1 (198-249)||(32906704-32906756)
chr1 (199-247)||(38613725-38613773)
[»] scaffold0576 (1 HSPs)
scaffold0576 (198-249)||(284-334)
[»] scaffold0107 (1 HSPs)
scaffold0107 (198-249)||(48901-48952)
[»] scaffold0240 (1 HSPs)
scaffold0240 (199-249)||(18743-18793)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 13127789 - 13127648
Alignment:
Q  13 caagaatatcagtccatgatttgaaataacttaatcattcatgaaatgaaactactatgacgtgtgtttgtgaggttcataatgaacacttgaatttaat 112  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  13127789 caagaatatcactctatgatttgaaataacttaatcattcatgaaatgaaactactatgatgtgtgtttgtgaggttcataatgaacatttgaatttaat 13127690  T
Q  113 acgtacacaacgatgcatataatagtagcatagatccacaac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13127689 acgtacacaacgatgcatataatagtagcatagatccacaac 13127648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 40643392 - 40643342
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  40643392 tactacctccgtccctaattatcagggccttttgaaaaaataacgggaatt 40643342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 13127629 - 13127585
Alignment:
Q  156 aaaatgaacgttgttaacattactcttaaaatggagtatctcata 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||    
T  13127629 aaaatgaatgttgttaacattacttttaaaatggagtatctcata 13127585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 9268032 - 9268082
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  9268032 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 9268082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 19571669 - 19571719
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  19571669 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 19571719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 41418606 - 41418556
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  41418606 tactacctccgtccctaattatgaggcccttttgaaaaaataacgggaatt 41418556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 8283851 - 8283899
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaa 247  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||    
T  8283851 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaa 8283899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 7940749 - 7940698
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  7940749 atactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 7940698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 8144458 - 8144509
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| |||  |||||| | ||||||||||||||    
T  8144458 atactacctccgtccctaattataaggctcttttgaaaaaataacgggaatt 8144509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 14619540 - 14619497
Alignment:
Q  206 tccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  14619540 tccgtccctaattataaggtccttttgaaaaaataacgggaatt 14619497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 32964425 - 32964378
Alignment:
Q  202 tacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||  |||||||||| | ||||||||||||||    
T  32964425 tacctccgtccctaattatagggtccttttgaaaaaataacgggaatt 32964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 9065205 - 9065155
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||| |||||||||||||||| ||| ||||||| | ||||||||||||||    
T  9065205 tactatctccgtccctaattataaggcccttttgaaaaaataacgggaatt 9065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 12807220 - 12807170
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||   ||||||||| | ||||||||||||||    
T  12807220 tactacctccgtccctaattatagagtccttttgaaaaaataacgggaatt 12807170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 20142000 - 20142050
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  20142000 tactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 20142050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 35547559 - 35547509
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | || |||||||||||    
T  35547559 tactacctccgtccctaattataaggcccttttgaaaaagtaacgggaatt 35547509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 43408191 - 43408242
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  43408191 atactacctccgtccctaattataaggtccttttgaaaaaataacgggaatt 43408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 12906150 - 12906201
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||| |||||    
T  12906150 atactacctccgtccctaattataaggtccttttgaaaaaataacgagaatt 12906201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 40919253 - 40919202
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||    
T  40919253 atactacatccgtccctaattataaggtccttttgaaaaaataacgggaatt 40919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 46845231 - 46845281
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  46845231 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 46845281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 50433128 - 50433178
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  50433128 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 50433178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 8322222 - 8322171
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||| |||||||  |||||||||| | ||||||||||||||    
T  8322222 atactacctccgtccttaattatagggtccttttgaaaaaataacgggaatt 8322171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 15996513 - 15996564
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  15996513 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 15996564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 17753273 - 17753324
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||| ||||||||||||||||  |||||||||| | ||||||||||||||    
T  17753273 atactatctccgtccctaattatagggtccttttgaaaaaataacgggaatt 17753324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 19054593 - 19054644
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||| ||||||||||||||||  |||||||||| | ||||||||||||||    
T  19054593 atactatctccgtccctaattatagggtccttttgaaaaaataacgggaatt 19054644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 42801520 - 42801571
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  42801520 atactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 42801571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 43686800 - 43686749
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| | ||||| | ||||||||||||||    
T  43686800 atactacctccgtccctaattataaggcctttttgaaaaaataacgggaatt 43686749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 47067233 - 47067182
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  47067233 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 47067182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 10656989 - 10656939
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | |||||||| |||||    
T  10656989 tactacctccgtccctaattataaggcccttttgaaaaaataacgtgaatt 10656939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 41992279 - 41992329
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| | ||||| | ||||||||||||||    
T  41992279 tactacctccgtccctaattataaggccattttgaaaaaataacgggaatt 41992329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 9342136 - 9342086
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  9342136 tactacctccgtccctaattataaggtccttttgaaaaaataacgggaatt 9342086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 2090958 - 2090907
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||||||    
T  2090958 atactacctacgtccctaattataaggtccttttgaaaaaataacgggaatt 2090907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 25045382 - 25045432
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  25045382 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 25045432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 15355294 - 15355344
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  15355294 atactacctccgtccctaattat-agggccttttgaaaaaataacgggaatt 15355344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 31091742 - 31091691
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  31091742 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 31091691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 7772474 - 7772424
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | |||||||| |||||    
T  7772474 tactacctccgtccctaattataaggcccttttgaaaaaataacgtgaatt 7772424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 1748378 - 1748431
Alignment:
Q  196 tcatactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||||  |||||||||| | ||||||||||||||    
T  1748378 tcatactacctccgtccctaattatagggtccttttgaaaaaataacgggaatt 1748431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 11865026 - 11865076
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  11865026 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 11865076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 34944158 - 34944208
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||||||||    
T  34944158 tactacctccgtccctaattatagggtccttttgaaaaaataacgggaatt 34944208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 18374428 - 18374479
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||  | ||||||||||||||    
T  18374428 atactacctccgtccctaattataaggcccttttaaaaaaataacgggaatt 18374479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 41004240 - 41004189
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  41004240 atactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 41004189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 45628619 - 45628670
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| | | ||||||| | ||||||||||||||    
T  45628619 atactacctccgtccctaattataaagcccttttgaaaaaataacgggaatt 45628670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 1142997 - 1143047
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| || |||||||  | ||||||||||||||    
T  1142997 tactacctccgtccctaattataagatccttttaaaaaaataacgggaatt 1143047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 2200277 - 2200227
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  2200277 tactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 2200227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 12970084 - 12970034
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||| |  |||||||||| | ||||||||||||||    
T  12970084 tactacctccgtccctaattgtagggtccttttgaaaaaataacgggaatt 12970034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 13336496 - 13336546
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  ||| |||||| | ||||||||||||||    
T  13336496 tactacctccgtccctaattatagggttcttttgaaaaaataacgggaatt 13336546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 19034708 - 19034658
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  19034708 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 19034658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 24345715 - 24345665
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  24345715 tactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 24345665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 31751370 - 31751320
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  31751370 tactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 31751320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 38214776 - 38214726
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||| |||||||||||||  |||||||||| | ||||||||||||||    
T  38214776 tactaccttcgtccctaattatagggtccttttgaaaaaataacgggaatt 38214726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 41834705 - 41834655
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||| |||||||||||||||||  |||||||||| | ||||||||||||||    
T  41834705 tactgcctccgtccctaattatagggtccttttgaaaaaataacgggaatt 41834655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 22182662 - 22182714
Alignment:
Q  197 catactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||| |||||||||||||||||  || ||||||| | ||||||||||||||    
T  22182662 catacttcctccgtccctaattatagggcccttttgaaaaaataacgggaatt 22182714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 30466424 - 30466373
Alignment:
Q  198 atactacctccgtccctaattatcag-gtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||||| | ||||||||||||||    
T  30466424 atactacctccgtccctaatta-cagtgtccttttgaaaaaataacgggaatt 30466373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 5162603 - 5162552
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  5162603 atactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 5162552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 5783885 - 5783936
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  5783885 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 5783936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 38967442 - 38967391
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||| ||||||||| ||| ||||||| | ||||||||||||||    
T  38967442 atactacctccgttcctaattataaggcccttttgaaaaaataacgggaatt 38967391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 5774347 - 5774297
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||  ||| ||||||| | ||||||||||||||    
T  5774347 tactacctccgtccctaattacaaggcccttttgaaaaaataacgggaatt 5774297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 9035280 - 9035330
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||| |||||||||||||||||  |||||||||| | ||||||||||||||    
T  9035280 tactccctccgtccctaattatagggtccttttgaaaaaataacgggaatt 9035330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 38780881 - 38780931
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  38780881 tactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 38780931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 55562864 - 55562915
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  55562864 atactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 55562915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 29460444 - 29460494
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  29460444 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 29460494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 31937374 - 31937324
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  31937374 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 31937324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 41191275 - 41191325
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  41191275 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 41191325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 25123982 - 25124034
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttg-tacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| |||||||||||  | ||||||||||||||    
T  25123982 atactacctccgtccctaattataaggtccttttgaaaaaaataacgggaatt 25124034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 17339377 - 17339326
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  17339377 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 17339326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 32898977 - 32899028
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | |||||||| |||||    
T  32898977 atactacctccgtccctaattataaggcccttttgaaaaaataacgagaatt 32899028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 50450963 - 50451014
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  50450963 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 50451014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 375722 - 375672
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||| ||||||| ||||||| ||||||||||| | ||||||||||||||    
T  375722 tactacatccgtccataattataaggtccttttgaaaaaataacgggaatt 375672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 39880035 - 39879985
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  39880035 tactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 39879985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 47683386 - 47683336
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  47683386 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 47683336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 3735 - 3685
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  |||||||||| | ||||||||||||||    
T  3735 tactacctccgtccctaattatagggtccttttgaaaaaataacgggaatt 3685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 27881827 - 27881877
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||||||||||| | |||||||| |||||    
T  27881827 tactacctccgtccctaattataaggtccttttgaaaaaataacgtgaatt 27881877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 41444500 - 41444450
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| || |||||||| | ||||||||||||||    
T  41444500 tactacctccgtccctaattataagatccttttgaaaaaataacgggaatt 41444450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 1575016 - 1574965
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  1575016 atactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 1574965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 12930616 - 12930566
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  12930616 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 12930566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 27529524 - 27529474
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  27529524 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 27529474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 28016285 - 28016335
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||| ||||||||||||||| ||| ||||||| | ||||||||||||||    
T  28016285 tactacttccgtccctaattataaggcccttttgaaaaaataacgggaatt 28016335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 47323268 - 47323318
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  |||| ||||| | ||||||||||||||    
T  47323268 tactacctccgtccctaattatagggtctttttgaaaaaataacgggaatt 47323318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 9715658 - 9715608
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  9715658 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 9715608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 23530843 - 23530793
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  23530843 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 23530793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 28888162 - 28888212
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  28888162 tactacctccgtccctaattataaggcccttttgaaaaaataacgggaatt 28888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 44529411 - 44529464
Alignment:
Q  196 tcatactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  44529411 tcatactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 44529464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 51422157 - 51422197
Alignment:
Q  191 gtatctcatactacctccgtccctaattatcaggtcctttt 231  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  51422157 gtatctaatactacctccgtccctaattataaggtcctttt 51422197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 51561068 - 51561120
Alignment:
Q  197 catactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  51561068 catactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 51561120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 27530342 - 27530392
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  27530342 atactacctccgtccctaattat-agggccttttgaaaaaataacgggaatt 27530392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 28885841 - 28885892
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  28885841 atactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 28885892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 38261639 - 38261588
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| |||| |||||| | ||||||||| ||||    
T  38261639 atactacctccgtccctaattataaggttcttttgaaaaaataacggaaatt 38261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 229147 - 229197
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||| |||| ||||||| ||||||||||| | ||||||||||||||    
T  229147 tactacctctgtccttaattataaggtccttttgaaaaaataacgggaatt 229197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 15892303 - 15892353
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||| ||| |||||||||||| ||||||||||| | ||||||||||||||    
T  15892303 tactatctctgtccctaattataaggtccttttgaaaaaataacgggaatt 15892353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 25284104 - 25284054
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  25284104 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 25284054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 27037567 - 27037517
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  27037567 tactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 27037517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 34931375 - 34931325
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  34931375 tactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 34931325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 40614646 - 40614696
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||  || ||||||| | ||||||||||||||    
T  40614646 tactacctccgtccctaattatagggcccttttgaaaaaataacgggaatt 40614696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 32906704 - 32906756
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttg-tacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  ||||||||||  | ||||||||||||||    
T  32906704 atactacctccgtccctaattatagggtccttttgaaaaaaataacgggaatt 32906756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 38613773 - 38613725
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaa 247  Q
    |||||||||||||||||||||| ||  ||||||| | ||||||||||||    
T  38613773 tactacctccgtccctaattataagacccttttgaaaaaataacgggaa 38613725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 284 - 334
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||||||||    
T  284 atactacctccgtccctaattat-agggccttttgaaaaaataacgggaatt 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 48952 - 48901
Alignment:
Q  198 atactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||||  | |||||||| | ||||||||||||||    
T  48952 atactacctccgtccctaattataggatccttttgaaaaaataacgggaatt 48901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 18793 - 18743
Alignment:
Q  199 tactacctccgtccctaattatcaggtccttttgtacaaataacgggaatt 249  Q
    |||||||||||||||||||||| ||  ||||||| | ||||||||||||||    
T  18793 tactacctccgtccctaattataagacccttttgaaaaaataacgggaatt 18743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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