View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_low_2 (Length: 531)
Name: NF4899_low_2
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Complemental strand, 25773762 - 25773263
Alignment:
| Q |
13 |
acatcatcatcgttattgttcttcacaaaaacctcaatctccccaaaacttagaacaacaccagcatgtaaattctgttcaactaaatgacccacttcat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25773762 |
acatcatcatcgttattgttcttcacaaaaacctcaatctccccaaaacttagaacaacaccagcatgtaaattttgttcaactaaatgacccacttcat |
25773663 |
T |
|
| Q |
113 |
caaatctcaaccccatcttctcctcactcccatttccaagaaaaaattcaaaaatctcattctcaatagaaaccacttttaacccatcaagctcgttagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25773662 |
caaatctcaaccccatcttctcctcactcccatttccaagaaaaaattcaaaaatctcattctcaatagaaaccacttttaacccatcaagctcgttagg |
25773563 |
T |
|
| Q |
213 |
taaaaaaccaacttttccactttgaactaactctataaacctttttaaagcggtttttgcataaacacccatcaaaagaggacttctcttactcccactc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25773562 |
taaaaaaccaacttttccactttgaactaactctataaacctttttaaagcggtttttgcataaacacccatcaaaagaggacttctcttactcccactc |
25773463 |
T |
|
| Q |
313 |
ttcccagctaaaacatcaacaacccttcttgaattctcatcgaaccgaaccgtttcaaaccggtccggttcaatattacatnnnnnnnccggaggagaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
25773462 |
ttcccagctaaaacatcaacaacccttcttgaattctcatcgaaccgaaccgtttcaaaccggtccggttcaatattacataaaaaaaccggaggtgaag |
25773363 |
T |
|
| Q |
413 |
aacggtgaaagaatctagaagannnnnnnnnnnnnnnnnnntgaagtaaagcaaacttaacgtcatagctacgaaaaccagcttctgcaaaaaccctact |
512 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25773362 |
aacggtgaaagaatctagaagatggtggtggtggtggtggttgaagtaaagcaaacttaacatcatagctacgaaaaccagcttctgcaaaaaccctact |
25773263 |
T |
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