View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_low_22 (Length: 238)
Name: NF4899_low_22
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53118379 - 53118158
Alignment:
| Q |
1 |
ttgtttttattcaaaatcatgttgtaatctcttttcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaaca |
100 |
Q |
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| T |
53118379 |
ttgtttttattcaaaatcatgttgtaatctcttttcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaaca |
53118280 |
T |
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| Q |
101 |
taaaaatagttcagaaattggattacaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53118279 |
taaaaatagttcagaaattggattacaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataag |
53118180 |
T |
|
| Q |
201 |
ttgtggttatgattctaagttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
53118179 |
ttgtggttatgattctaagttt |
53118158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 53108966 - 53108832
Alignment:
| Q |
88 |
cagatattgaacataaaaatagttcagaaattggattacaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtca |
187 |
Q |
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|||| ||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |
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| T |
53108966 |
cagaaattgaacgtaaaaa-agttcagaaattggattaaaatgtgatctgatctgctttgcatagaaatatgggacattcttaactcacaatattagtca |
53108868 |
T |
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| Q |
188 |
tttgcttaataagttgtggtt-atgattctaagttt |
222 |
Q |
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|||| |||||||| ||||||| |||||||||||||| |
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| T |
53108867 |
tttgattaataagctgtggttaatgattctaagttt |
53108832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 53114458 - 53114413
Alignment:
| Q |
1 |
ttgtttttattcaaaatcatgttgtaatctcttttcccttgttgaa |
46 |
Q |
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||||||||||||||||||| ||||||| |||||||| ||| ||||| |
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| T |
53114458 |
ttgtttttattcaaaatcaggttgtaacctcttttctcttcttgaa |
53114413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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