View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4899_low_3 (Length: 508)
Name: NF4899_low_3
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_low_3 |
 | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Original strand, 36372619 - 36373098
Alignment:
| Q |
12 |
aattctaattcatattgactatgtgtcttgaagagtacaatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36372619 |
aattctaattcatattgactatgtgttttgaagagtacaatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaaga |
36372718 |
T |
|
| Q |
112 |
gtaacacaatggactctgctaaaaatattttctactttgtcacagccaaaaatcataaacacaagttaataatacataatagttggttccttataaactc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36372719 |
gtaacacaatggactctgctaaaaatattttctactttgtcacagccaaaaatcataaacacaagttaataatacataatagttggttccttataaactc |
36372818 |
T |
|
| Q |
212 |
tttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36372819 |
tttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaa |
36372918 |
T |
|
| Q |
312 |
tccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttggg |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36372919 |
tccaaaacttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttggg |
36373018 |
T |
|
| Q |
412 |
ttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373019 |
ttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
36373098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 42 - 491
Target Start/End: Original strand, 36386607 - 36387053
Alignment:
| Q |
42 |
aagagtacaatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattt |
141 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||||| |||||| |||| || |||||| || ||| |||||| ||| ||||||||| ||||| |||| || |
|
|
| T |
36386607 |
aagagtaaaatttgtgtca-ttggactatttcaactttctccacatacaaggcaagaaggttctcaaagag-aactcaatggactgtgctacaaatcttc |
36386704 |
T |
|
| Q |
142 |
tctactttgtcacagccaaaaatcataaacacaagtt---aataatacataatagttggttccttataaactctttgattctactccttccgaccttctc |
238 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||||| | | || ||||||| || | |||| ||||||||||||| ||||||| || ||||| |
|
|
| T |
36386705 |
tctactttgttacaacctaaaatcataaacacaagttgtcagtgatgcataataattcacttctta---actctttgattctgctccttctcacattctc |
36386801 |
T |
|
| Q |
239 |
cttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaatccaaatcttttgctcttggattcttc |
338 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||||| | ||||||||||| ||||||||||| ||||| ||| | |||||||||||||||||| |
|
|
| T |
36386802 |
tttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgctcttggattcttc |
36386901 |
T |
|
| Q |
339 |
actccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacg |
438 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36386902 |
actccaggaaaatcaacatctcgctatgttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaaca |
36387001 |
T |
|
| Q |
439 |
atacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
||||||| |||||| |||| ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
36387002 |
atacttccggaattttatc-atcgacccaaatggaaatctagtactccaccac |
36387053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 50 - 491
Target Start/End: Original strand, 36396396 - 36396837
Alignment:
| Q |
50 |
aatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattttctacttt |
149 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| |||| || ||||| || ||| |||||| ||| ||||||||||||||| |||| | |||||||| |
|
|
| T |
36396396 |
aatttgtgtcagttggactatttcaactttctccacatacaagccaagaaggttctcaaagaggaactcaatggactctgctacaaatcatctctacttt |
36396495 |
T |
|
| Q |
150 |
gtcacagccaaaaatcataaacacaagtt---aataatacataatagttggttccttataaactctttgattctactccttccgaccttctccttttgct |
246 |
Q |
| |
|
|| ||| || ||||| ||||||| ||||| | | || ||||||| || | ||| | ||||||||||||||||| |||| || ||||| ||||||| |
|
|
| T |
36396496 |
gttacatcccaaaattataaacaaaagttgtcagtgatgcataataatt---tacttcttaactctttgattctactacttctcacattctctttttgct |
36396592 |
T |
|
| Q |
247 |
cttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaatccaaatcttttgctcttggattcttcactccagc |
346 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||| | ||||||||||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
36396593 |
cttgttcttctgataccatatctattgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacatttgctcttggattcttcactccagg |
36396692 |
T |
|
| Q |
347 |
aaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacgatacttct |
446 |
Q |
| |
|
||| ||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||| || |||||| |
|
|
| T |
36396693 |
aaagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtttgggttgcaaatagagatgctcccatcaatgacacttct |
36396792 |
T |
|
| Q |
447 |
ggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
||||||||||||||| | | ||||| ||||||| |||| ||||| |
|
|
| T |
36396793 |
ggaattctatcaatcaaccaaaatgggaatctagaactccaccac |
36396837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 212 - 491
Target Start/End: Original strand, 36368203 - 36368482
Alignment:
| Q |
212 |
tttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaa |
311 |
Q |
| |
|
||||||||||||||||| |||| || ||||| || |||||| |||||||||||||| |||| | || ||||||||||||||| ||||| | || ||| |
|
|
| T |
36368203 |
tttgattctactccttcttgccttttctttttgttcctgttcttctgatatcatatcttctgatacacgcataagagatggtgagattcttatatctaaa |
36368302 |
T |
|
| Q |
312 |
tccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttggg |
411 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36368303 |
tctaaaacatttgctcttggattcttcactccaggaaagtccacctctcgctacgttggaatctggtacaacaatttgccaatccaaactgttgtttggg |
36368402 |
T |
|
| Q |
412 |
ttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
||||||||||| ||| ||||||||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
36368403 |
ttgcaaatagagatactccaatcaatgacacttctggaattctatcaatcgatcgaaatggaaatctagttctcaaccac |
36368482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 209 - 488
Target Start/End: Original strand, 36432831 - 36433107
Alignment:
| Q |
209 |
ctctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttcc |
308 |
Q |
| |
|
||||||||||||||| |||| |||| | ||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
36432831 |
ctctttgattctactacttctcacct---ctttttgctcttgttcttctgatactatatctactgtcaaaccattaagagatggtgagcttctgatttct |
36432927 |
T |
|
| Q |
309 |
aaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgttt |
408 |
Q |
| |
|
||||| ||| ||| |||||||||||||| || || ||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36432928 |
aaatctaaaatgttttctcttggattcttcgctaaaggaaaatccacatctcgctatgtaggaatttggtactacaatttgtcaatccaaactgttgttt |
36433027 |
T |
|
| Q |
409 |
gggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaac |
488 |
Q |
| |
|
|||||||||||||| ||| ||||||||| || ||||||||||||||||||||| | ||||||| ||||||||| |||||| |
|
|
| T |
36433028 |
gggttgcaaatagagatactccaatcaatgacacttctggaattctatcaatcaacccaaatggaaatctagttctcaac |
36433107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 491
Target Start/End: Original strand, 36410804 - 36411087
Alignment:
| Q |
208 |
actctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttc |
307 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||| |||||||| |||||| |||| ||| | ||||||| |||||||||||||| ||||| |||| |
|
|
| T |
36410804 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36410903 |
T |
|
| Q |
308 |
caaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtt |
407 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
36410904 |
taaatctaaaacatttgctcttggattcttcactccaggaaagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtt |
36411003 |
T |
|
| Q |
408 |
tgggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
||||||||||||||| || ||| ||||| || ||||||||||||||||||||| | | ||||| ||||||| |||| ||||| |
|
|
| T |
36411004 |
tgggttgcaaatagagatgctcccatcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccac |
36411087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 491
Target Start/End: Original strand, 36416135 - 36416418
Alignment:
| Q |
208 |
actctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttc |
307 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||| |||||||| |||||| |||| ||| | ||||||| |||||||||||||| ||||| |||| |
|
|
| T |
36416135 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36416234 |
T |
|
| Q |
308 |
caaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtt |
407 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
36416235 |
taaatctaaaacatttgctcttggattcttcactccaggaaagtccacctctcgctatgttggaatctggtacaacaatttgccgatccaaactgttgtt |
36416334 |
T |
|
| Q |
408 |
tgggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
||||||||||||||| || ||| ||||| || ||||||||||||||||||||| | | ||||| ||||||| |||| ||||| |
|
|
| T |
36416335 |
tgggttgcaaatagagatgctcccatcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccac |
36416418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 234 - 482
Target Start/End: Original strand, 36403513 - 36403761
Alignment:
| Q |
234 |
ttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaatccaaatcttttgctcttggat |
333 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |||||| | ||||||||||||| ||||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
36403513 |
ttctctttttgctcttgttcttctgataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctcttggat |
36403612 |
T |
|
| Q |
334 |
tcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaat |
433 |
Q |
| |
|
|||||||||||| ||| ||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| || |
|
|
| T |
36403613 |
tcttcactccaggaaagtccgcctctcgctatgttggaatttggtactacaatttgccaatccaaactgttgtttgggttgcaaacagagatgctcccat |
36403712 |
T |
|
| Q |
434 |
caacgatacttctggaattctatcaatcgatccaaatgaaaatctagta |
482 |
Q |
| |
|
||| || |||||||| ||| |||| || || ||||||| |||||||||| |
|
|
| T |
36403713 |
caatgacacttctgggattttatccattgacccaaatggaaatctagta |
36403761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 208 - 491
Target Start/End: Original strand, 36424970 - 36425253
Alignment:
| Q |
208 |
actctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttc |
307 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||| |||||||| |||||| |||| ||| | ||||||| |||||||||||||| ||||| |||| |
|
|
| T |
36424970 |
actctttgattctactatgtctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttc |
36425069 |
T |
|
| Q |
308 |
caaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtacaacaatttgccaatccaaactgttgtt |
407 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||| || |||||| |||||||||||||| |
|
|
| T |
36425070 |
taaatctaaaacatttgctcttggattcttcactccaggaaagtccacctctcgctatgttggaatttggtactactatttgcttttccaaactgttgtt |
36425169 |
T |
|
| Q |
408 |
tgggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccac |
491 |
Q |
| |
|
|||||||||||||| || ||| ||||| || ||||||||||||||||||||||| ||||||| ||||||| |||| ||||| |
|
|
| T |
36425170 |
tgggttgcaaatagtgatgctcccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccac |
36425253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 455
Target Start/End: Complemental strand, 55676665 - 55676492
Alignment:
| Q |
282 |
ataagagatggtgagcttcttgtttccaaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtaca |
381 |
Q |
| |
|
|||| |||||||||| ||||| | || ||||| ||| | ||||||||||||||||||||||||| ||| |||| ||||| | ||||| || ||||||| |
|
|
| T |
55676665 |
ataaaagatggtgagattcttatatctaaatctaaaacctttgctcttggattcttcactccagtaaagtccatctctcgtcacgttggaatctggtaca |
55676566 |
T |
|
| Q |
382 |
acaatttgccaatccaaactgttgtttgggttgcaaatagaaatagtccaatcaacgatacttctggaattcta |
455 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| || ||||||||| || |||||||||| |||| |
|
|
| T |
55676565 |
acaatttgccaatacacactgttgtttgggttgcaaatagagatgctccaatcaatgacacttctggaaatcta |
55676492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 36410669 - 36410786
Alignment:
| Q |
58 |
tcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattttctactttgtcacagc |
157 |
Q |
| |
|
|||||| || || |||| || ||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
36410669 |
tcagttagaatagttcaattatctcttcatgaaatgcaagaggggtatgatagaaaaactcaatggactctgctaaaaatcttctctaccttagcacagt |
36410768 |
T |
|
| Q |
158 |
caaaaatcataaacacaa |
175 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
36410769 |
cgaaaatcataaaaacaa |
36410786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 36416000 - 36416117
Alignment:
| Q |
58 |
tcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattttctactttgtcacagc |
157 |
Q |
| |
|
|||||| || || |||| || ||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
36416000 |
tcagttagaatagttcaattatctcttcatgaaatgcaagaggggtatgatagaaaaactcaatggactctgctaaaaatcttctctaccttagcacagt |
36416099 |
T |
|
| Q |
158 |
caaaaatcataaacacaa |
175 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
36416100 |
cgaaaatcataaaaacaa |
36416117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 36424835 - 36424952
Alignment:
| Q |
58 |
tcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattttctactttgtcacagc |
157 |
Q |
| |
|
|||||| || || |||| || ||||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
36424835 |
tcagttagaatagttcaattatctcttcatgaaatgcaagaggggtatgatagaaaaactcaatggactctgctaaaaatcttctctaccttagcacagt |
36424934 |
T |
|
| Q |
158 |
caaaaatcataaacacaa |
175 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
36424935 |
cgaaaatcataaaaacaa |
36424952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 36432660 - 36432711
Alignment:
| Q |
57 |
gtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaa |
108 |
Q |
| |
|
|||| ||||| ||||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
36432660 |
gtcaattggactatttcaattttctcctcataaaatgcaagaggggtatgaa |
36432711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 36432742 - 36432815
Alignment:
| Q |
105 |
tgaaagagtaacacaatggactctgctaaaaatattttctactttgtcacagccaaaaatcataaacacaagtt |
178 |
Q |
| |
|
|||||||| | | ||||||||||||||||| || |||||||| |||||| || | ||||||||||||||||| |
|
|
| T |
36432742 |
tgaaagaggagctcaatggactctgctaaatatcttttctaccttgtcaaagatcataatcataaacacaagtt |
36432815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 34712533 - 34712418
Alignment:
| Q |
282 |
ataagagatggtgagcttcttgtttccaaatccaaatcttttgctcttggattcttcactccagcaaaatccacatctcgctatgttggtatttggtaca |
381 |
Q |
| |
|
|||| |||||||||| || || | || ||||| ||| | ||||||||||||||| ||||||||| ||| ||||| |||||||| ||||| || ||||||| |
|
|
| T |
34712533 |
ataaaagatggtgagatttttatatctaaatctaaaacctttgctcttggattcatcactccagtaaagtccacctctcgctacgttggaatctggtaca |
34712434 |
T |
|
| Q |
382 |
acaatttgccaatcca |
397 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34712433 |
acaatttgccaatcca |
34712418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 34712306 - 34712387
Alignment:
| Q |
399 |
actgttgtttgggttgcaaatagaaatagtccaatcaacgatacttctggaattctatcaatcgatccaaatgaaaatctag |
480 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| || | ||||| |||||||| |
|
|
| T |
34712306 |
actgttgtttgggttgcaaatagagatactccaatcaatgacacttctggaattctatcaattgaccaaaatggaaatctag |
34712387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 42772466 - 42772602
Alignment:
| Q |
42 |
aagagtacaatttatgtcagttggagtatttcacttttctcttcataaaatgcaagaggggtctgaaagagtaacacaatggactctgctaaaaatattt |
141 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||| | ||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||||||| || |
|
|
| T |
42772466 |
aagagtaaaatttgtgtcagttggaatcttttaattttctcctcataaaattcaagacttacgtgaaagaggaactcaatggactctgctaaaaaatttc |
42772565 |
T |
|
| Q |
142 |
tctactttgtcacagccaaaaatcataaacacaagtt |
178 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
42772566 |
tctaccttgtcacaatccaaaatcataaacacaagtt |
42772602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 42772616 - 42772679
Alignment:
| Q |
207 |
aactctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatcta |
270 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
42772616 |
aactctttgattctactacttctcagcttctctttttgctcttgttcttctgataccatatcta |
42772679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 11110 - 11047
Alignment:
| Q |
207 |
aactctttgattctactccttccgaccttctccttttgctcttgttctactgatatcatatcta |
270 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
11110 |
aactctttgattctactacttctcagcttctctttttgctcttgttcttctgataccatatcta |
11047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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