View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4899_low_5 (Length: 467)

Name: NF4899_low_5
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4899_low_5
NF4899_low_5
[»] chr7 (17 HSPs)
chr7 (1-452)||(20414153-20414604)
chr7 (1-449)||(20455785-20456221)
chr7 (249-309)||(13888635-13888695)
chr7 (250-318)||(21219285-21219353)
chr7 (86-149)||(7327758-7327821)
chr7 (269-367)||(7311865-7311963)
chr7 (250-333)||(7327584-7327667)
chr7 (81-132)||(22534240-22534291)
chr7 (81-135)||(22525575-22525629)
chr7 (176-228)||(13888574-13888626)
chr7 (250-293)||(18325699-18325742)
chr7 (255-294)||(24390870-24390909)
chr7 (86-129)||(26217543-26217586)
chr7 (165-227)||(21210918-21210980)
chr7 (92-129)||(24016362-24016399)
chr7 (3-35)||(7327860-7327892)
chr7 (86-130)||(26236438-26236482)
[»] chr1 (1 HSPs)
chr1 (262-333)||(31443574-31443645)
[»] chr4 (3 HSPs)
chr4 (77-294)||(2910462-2910682)
chr4 (91-135)||(11982094-11982138)
chr4 (250-294)||(19356933-19356977)
[»] scaffold0128 (2 HSPs)
scaffold0128 (84-132)||(8202-8250)
scaffold0128 (250-293)||(3582-3625)
[»] scaffold0064 (1 HSPs)
scaffold0064 (93-135)||(23813-23855)
[»] chr5 (3 HSPs)
chr5 (260-294)||(23086145-23086179)
chr5 (250-295)||(29598119-29598164)
chr5 (250-295)||(29641808-29641853)


Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 20414604 - 20414153
Alignment:
Q  1 tctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggccacaacctta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||    
T  20414604 tctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggcaacgatctta 20414505  T
Q  101 taagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatcctaatttatcagaaacttttctgg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20414504 taagtgttggttgaatcatcataaccaaacacaaacatccaagagttccgtctataattgtcagcatgcaaatatcctaatttatcagaaatttttctgg 20414405  T
Q  201 tggccggattccaaaaacggagccacataactgcattatgattggcgagagaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacg 300  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  20414404 tggccgggttccaaaaacggagccacacaactgcattatcattggcgagagaataaccgagcaagcagaccaatccattgcaggaaccaacaacttcacg 20414305  T
Q  301 acagcccttatcattcaactgatagtaaggatctttaagaggagtgatataacggttctccaataaactgctaatggagaagggcatgaaactgcaatca 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20414304 acagcccttatcattcaactgatagtgaggatctttaagaggagtgatataacggttctccaataaactgctaatggagaagggcatgaaactgcaatca 20414205  T
Q  401 tcgatttctgtgggtctgttgtacatgactagtgagaaacatgggttccttg 452  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20414204 tcggtttctgtgggtctgttgtacatgactagtgagaaacatgggttccttg 20414153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 20456221 - 20455785
Alignment:
Q  1 tctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtcttcacaatttaaggccacaacctta 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| |||||            |||||||||| |||||||||||||||    
T  20456221 tctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaacat------------cttcacaattcaaggccacaacctta 20456134  T
Q  101 taagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatcctaatttatcagaaacttttctgg 200  Q
    || |||| |||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  20456133 tatgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttccgtctataattgtcatcatgcaaatatcctaatttatcagaaattttcctgg 20456034  T
Q  201 tggccggattccaaaaacggagccacataactgcattatgattggcgagagaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacg 300  Q
    |||| || ||||||||||| | ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || || |||    
T  20456033 tggcagggttccaaaaacgaaaccacataactgcactatgatcggcgagagaataaccaagcaagcaaaccaatccattgcaggaaccaataaatttacg 20455934  T
Q  301 acagcccttatcattcaactgatagtaaggatctttaagaggagtgatataacggttctccaataaactgctaatggagaagggcatgaaactgcaatca 400  Q
    |||  ||||||||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||| || ||    
T  20455933 acaatccttatcattcaactcatagtaaggatctttaggaggagtgatataacggttttcgaataaactgctaacggagaagggtatgaaactgaaaaca 20455834  T
Q  401 tcgatttctgtgggtctgttgtacatgactagtgagaaacatgggttcc 449  Q
    ||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  20455833 tcggtttcggtgggtctgttgtacatgactagtgagaaatatgggttcc 20455785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 13888635 - 13888695
Alignment:
Q  249 gagaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgacagccctt 309  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| | ||||||| ||||    
T  13888635 gagaataaccgagcaagcagaccaatccattgcaggaaccaacaacatgacgacagtcctt 13888695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 21219285 - 21219353
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgacagcccttatcattcaa 318  Q
    |||||||||  |||| || ||||||||||||||||||||||||||||||| |||  |||||||||||||    
T  21219285 agaataaccgcgcaaacagaccaatccattgcaggaaccaacaacttcacaacaatccttatcattcaa 21219353  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 7327821 - 7327758
Alignment:
Q  86 aaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttcc 149  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||  ||||||| ||||    
T  7327821 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 7327758  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 367
Target Start/End: Original strand, 7311865 - 7311963
Alignment:
Q  269 accaatccattgcaggaaccaacaacttcacgacagcccttatcattcaactgatagtaaggatctttaagaggagtgatataacggttctccaataaa 367  Q
    |||||||||||||||||||||| ||||||||||||  |||| |||| |||| |||| |||||||| ||| ||   ||||||| |||||| || ||||||    
T  7311865 accaatccattgcaggaaccaataacttcacgacaatccttgtcatgcaacagataataaggatccttaggaaaggtgatatgacggttatctaataaa 7311963  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 7327667 - 7327584
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaacttcacgacagcccttatcattcaactgatagtaaggatc 333  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| ||||||||||||  |||| |||| |||  |||| ||||||||    
T  7327667 agaattacctaacaagcagaccaatccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatc 7327584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 22534291 - 22534240
Alignment:
Q  81 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 132  Q
    |||||||||| ||||||||||| |||| |||||||| |||||||||||||||    
T  22534291 aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 22525575 - 22525629
Alignment:
Q  81 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaa 135  Q
    |||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||    
T  22525575 aatttaaggctacaactttataggtgtcggttgaattatcataaccaaacacaaa 22525629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 13888574 - 13888626
Alignment:
Q  176 cctaatttatcagaaacttttctggtggccggattccaaaaacggagccacat 228  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||| ||||||    
T  13888574 cctaatttatcagatatttttctggtggcgggattccagaaacggaaccacat 13888626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 18325742 - 18325699
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaa 293  Q
    |||||||||||||||||| | |||||||||||| ||||||||||    
T  18325742 agaataacctagcaagcatagcaatccattgcaagaaccaacaa 18325699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 24390909 - 24390870
Alignment:
Q  255 aacctagcaagcaaaccaatccattgcaggaaccaacaac 294  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  24390909 aaccaagcaagcaaaccaaaccattgcaggaaccaacaac 24390870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 26217586 - 26217543
Alignment:
Q  86 aaggccacaaccttataagtgttggttgaatcatcataaccaaa 129  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
T  26217586 aaggccacaaccttgtaagttttcgttgaatcatcataaccaaa 26217543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 21210918 - 21210980
Alignment:
Q  165 catgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccaca 227  Q
    |||||||||| |||||||||||||| |  ||||||||||| || ||||| ||| |||||||||    
T  21210918 catgcaaataccctaatttatcagatatatttctggtggcggggttccagaaatggagccaca 21210980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 24016399 - 24016362
Alignment:
Q  92 acaaccttataagtgttggttgaatcatcataaccaaa 129  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24016399 acaaccttataagttttcgttgaatcatcataaccaaa 24016362  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7327892 - 7327860
Alignment:
Q  3 tccaaacattatcacccaaactaaaaatgctca 35  Q
    |||||||||||||||||||| ||||||||||||    
T  7327892 tccaaacattatcacccaaagtaaaaatgctca 7327860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 26236482 - 26236438
Alignment:
Q  86 aaggccacaaccttataagtgttggttgaatcatcataaccaaac 130  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||    
T  26236482 aaggctacaaccttgtaagtttttgttgaatcatcataaccaaac 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 31443574 - 31443645
Alignment:
Q  262 caagcaaaccaatccattgcaggaaccaacaacttcacgacagcccttatcattcaactgatagtaaggatc 333  Q
    |||||| ||||||||||||||||||||||||||| || ||||| |||| ||| |||| ||||||||||||||    
T  31443574 caagcagaccaatccattgcaggaaccaacaactccaggacagtccttctcaatcaattgatagtaaggatc 31443645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 294
Target Start/End: Complemental strand, 2910682 - 2910462
Alignment:
Q  77 tcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatc 176  Q
    |||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||| ||| ||||| |   ||   |||||| |  | ||| |||| | |    
T  2910682 tcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaaaaacaccaattataatcgctatcatacaaaaacc 2910583  T
Q  177 ctaatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcatta---tgattggcgagagaataacctagcaagcaaaccaa 273  Q
    ||||||||| ||| | | | || ||||| || ||||| |||||||||||||||| || ||||   | || ||  | |||||||||  | ||||| |||||    
T  2910582 ctaatttattagatattgtccttgtggcagggttccacaaacggagccacataagtgtattatcttcatcgggaaaagaataaccgcgtaagcagaccaa 2910483  T
Q  274 tccattgcaggaaccaacaac 294  Q
    ||||||||| |||||||||||    
T  2910482 tccattgcaagaaccaacaac 2910462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 11982094 - 11982138
Alignment:
Q  91 cacaaccttataagtgttggttgaatcatcataaccaaacacaaa 135  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  11982094 cacaaccttataagtgtcgcttgaattaacataaccaaacacaaa 11982138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 19356977 - 19356933
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaac 294  Q
    ||||||||| ||||| |||| |||||||||||| |||||||||||    
T  19356977 agaataaccaagcaaacaaagcaatccattgcaagaaccaacaac 19356933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 8250 - 8202
Alignment:
Q  84 ttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 132  Q
    ||||||||||||| |||||||||| |||||||  |||||||||||||||    
T  8250 ttaaggccacaactttataagtgtcggttgaactatcataaccaaacac 8202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 3625 - 3582
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaa 293  Q
    |||| ||||||||||||||||||||||||| || ||||||||||    
T  3625 agaaaaacctagcaagcaaaccaatccattacacgaaccaacaa 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 23855 - 23813
Alignment:
Q  93 caaccttataagtgttggttgaatcatcataaccaaacacaaa 135  Q
    |||||||||||||||||||| |||  |||||||||||||||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaa 23813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 23086179 - 23086145
Alignment:
Q  260 agcaagcaaaccaatccattgcaggaaccaacaac 294  Q
    |||||||||| ||||||||||||||||||||||||    
T  23086179 agcaagcaaagcaatccattgcaggaaccaacaac 23086145  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 29598119 - 29598164
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaact 295  Q
    ||||||||| ||||| |||| |||||||||||| ||||||||||||    
T  29598119 agaataaccaagcaaacaaagcaatccattgcatgaaccaacaact 29598164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 29641853 - 29641808
Alignment:
Q  250 agaataacctagcaagcaaaccaatccattgcaggaaccaacaact 295  Q
    ||||||||| ||||| |||| |||||||||||| ||||||||||||    
T  29641853 agaataaccaagcaaacaaagcaatccattgcatgaaccaacaact 29641808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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