View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4899_low_8 (Length: 359)
Name: NF4899_low_8
Description: NF4899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4899_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 52731411 - 52731077
Alignment:
| Q |
18 |
atttatacccttactcttccaccacctcttcacatcacttcctctcccatcttaataatcttatcttagaataacaagactagctccatagtacagtaat |
117 |
Q |
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| T |
52731411 |
atttatacccttactcttccaccacctcttcacatcacttcctctcccttcttaataatcttatcttagaataacaagactagctccatagtacagtaat |
52731312 |
T |
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| Q |
118 |
ggctgattcaggtggatcttcggggagaatgtggtgctccataccagaacggtttcagctgcatgcggccatgttggccctgcagtttggatatgctggt |
217 |
Q |
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| T |
52731311 |
ggctgattcaggtggatcttcggggagaatgtggtgctccataccagaacggtttcagctgcatgcggccatgttggccctgcagtttggatatgctggt |
52731212 |
T |
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| Q |
218 |
ttccatgtcgtctcaagagctgcccttaacatgggtgttagcaaacttgttttcccagtttaccgcaatattattgcttttcttctcctccttccttttg |
317 |
Q |
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| T |
52731211 |
ttccatgtcgtctcaagagctgcccttaacatgggtgttagcaaacttgttttcccagtttaccgcaatattattgcttttcttctcctccttccttttg |
52731112 |
T |
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| Q |
318 |
cctacttcttggaaaagttagtcctagtattatct |
352 |
Q |
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| T |
52731111 |
cctacttcttggaaaagttagtcctagtgttatct |
52731077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 338
Target Start/End: Complemental strand, 7370360 - 7370192
Alignment:
| Q |
170 |
tttcagctgcatgcggccatgttggccctgcagtttggatatgctggtttccatgtcgtctcaagagctgcccttaacatgggtgttagcaaacttgttt |
269 |
Q |
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| T |
7370360 |
tttcagctgcatgtggccatgttggccttgcagtttggttatgctggtttccatgttgtttcaagagctgcacttaacatgggagttagcaaacttgttt |
7370261 |
T |
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| Q |
270 |
tcccagtttaccgcaatattattgcttttcttctcctccttccttttgcctacttcttggaaaagttag |
338 |
Q |
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|||| || || | || || |||||||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
7370260 |
tccctgtctatagaaacatcattgctttgcttctcctccttccatttgcttatttcttggaaaagttag |
7370192 |
T |
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