View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4900-Insertion-2 (Length: 636)
Name: NF4900-Insertion-2
Description: NF4900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4900-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 28832921 - 28833316
Alignment:
| Q |
7 |
acatattaattagttatgatgattgtctagtacatggtgattcacaaacaagtacgataatgattggatgtgacaaattatcgtatagtcaagcagacat |
106 |
Q |
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| T |
28832921 |
acatattaattagttatgctgattgtctagtacatggtgattcacaaacaaatatgctattgaatggatgtaacatattctcctatactgatgcaaacat |
28833020 |
T |
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| Q |
107 |
gcgtagcatattctatgaaaacctcaacagaacatttatagatttgagaaatcaaattagcaatgaaagcaagcactttgccacatcacaacaaga---c |
203 |
Q |
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| T |
28833021 |
gcgtcgcatatcctatgaaaacatcaacgaaacttttctagatttgagaaatcaaattagcaatcaaagcaagcactttgccacatcacaacaacaagcc |
28833120 |
T |
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| Q |
204 |
acaggagcagtaactgtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacaccgcctctaccaaaatcagta |
303 |
Q |
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| T |
28833121 |
atagatgaggtaaaagtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacactgcttctaccgaaatcagta |
28833220 |
T |
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| Q |
304 |
cctgcgcttccattggggctagatttatctacgatgggtgtttcctcaggtatgtccatatgaagttacag-gtccaagttagtactatgaactta |
398 |
Q |
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| T |
28833221 |
cctgcgcttccattggggctagatttatctacgatgggtgtttcctcaggtatgtccatatgaagtgacagcatccaagttagtactatgaactta |
28833316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 400 - 636
Target Start/End: Original strand, 28833403 - 28833642
Alignment:
| Q |
400 |
caatagatttgttattaaccaggttatggacttctgttatggattataaaagaaaatgatttcgcaccagggttaatcgccatttgatgccaattttgtt |
499 |
Q |
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| T |
28833403 |
caatagatttgttattaaccaggttatggacttctgttacggattataaaagaaaatgatttcgcaccagggttaatcgccatttgatgccaattttgtt |
28833502 |
T |
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| Q |
500 |
agaacaacaa---gtaacnnnnnnnttaatgaaaaagcaaatcacaaacaatataacacgaccatttgtttatgtagctcggctaattgtgtatatctct |
596 |
Q |
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| T |
28833503 |
agaacaacaacaagtaacaaaaaaattaatgaaaaagcaaatcacaaacaatataacacgaccatttgtttatgtagctgggctaattgtgtatatctct |
28833602 |
T |
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| Q |
597 |
gtgatagtatctgcgatagtatatcagctatagtttcgta |
636 |
Q |
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| T |
28833603 |
gtgatagtatctgcgatagtatatcagctatagtttcgta |
28833642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 136 - 370
Target Start/End: Original strand, 28823797 - 28824034
Alignment:
| Q |
136 |
gaacatttatagatttgagaaatcaaattagcaatgaaagcaagcactttgccacatcacaacaagacacaggagcagtaactgtatattctatgtttca |
235 |
Q |
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| T |
28823797 |
gaacatttttagatttgaagaatcaaattagcaatgaaagcaaacactttgccacatcacaacaagccataggtgaggtaattgtattttctatgtttca |
28823896 |
T |
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| Q |
236 |
atgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacaccgcctctaccaaaatcagtacctgc---gcttccattggggctagatttatc |
332 |
Q |
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| T |
28823897 |
atgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatccgtagttgctcagctgctaatggagctagagtcatc |
28823996 |
T |
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| Q |
333 |
tacgatgggtgtttcctcaggtatgtccatatgaagtt |
370 |
Q |
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| T |
28823997 |
tatgatggctgcttcctcaggtatgtacatatggagtt |
28824034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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