View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4900-Insertion-6 (Length: 124)
Name: NF4900-Insertion-6
Description: NF4900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4900-Insertion-6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 1e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 41557424 - 41557308
Alignment:
| Q |
8 |
tttctttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggttgcccaccggatcttttcgatagacggtgtataaaagcagg |
107 |
Q |
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| T |
41557424 |
tttctttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggtggcccaccggatcttttcgatagacggtgtataaaagcagg |
41557325 |
T |
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| Q |
108 |
ccacttgaaaccataac |
124 |
Q |
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| T |
41557324 |
ccacttgaaaccataac |
41557308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 41583553 - 41583437
Alignment:
| Q |
8 |
tttctttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggttgcccaccggatcttttcgatagacggtgtataaaagcagg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41583553 |
tttctttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggtggcccaccggatcttttcgatagacggtgtataaaagcagg |
41583454 |
T |
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| Q |
108 |
ccacttgaaaccataac |
124 |
Q |
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| T |
41583453 |
ccacttgaaaccataac |
41583437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 6e-41
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 41590084 - 41589968
Alignment:
| Q |
8 |
tttctttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggttgcccaccggatcttttcgatagacggtgtataaaagcagg |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| | ||||||| || | |
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| T |
41590084 |
tttcattcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggtggcccaccagatcttttcgataaacgatatataaaaccaag |
41589985 |
T |
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| Q |
108 |
ccacttgaaaccataac |
124 |
Q |
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| T |
41589984 |
ccacttgaaaccataac |
41589968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 41571131 - 41571020
Alignment:
| Q |
13 |
ttcactctctccaatgaatttggaagatctatccctgtgatcctcaatttgggttgcccaccggatcttttcgatagacggtgtataaaagcaggccact |
112 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||| ||| | || ||| ||||||||| |
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| T |
41571131 |
ttcactctctccaacaaatttggaagatctatccctgtgatcttcaacttgggtggcccaccagatcttttcgataaacgaagcattaaaccaggccact |
41571032 |
T |
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| Q |
113 |
tgaaaccataac |
124 |
Q |
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| T |
41571031 |
tgaaaccgtaac |
41571020 |
T |
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