View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4900_high_2 (Length: 405)

Name: NF4900_high_2
Description: NF4900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4900_high_2
NF4900_high_2
[»] chr5 (1 HSPs)
chr5 (10-384)||(3004073-3004464)
[»] chr4 (1 HSPs)
chr4 (10-384)||(54654130-54654511)
[»] chr7 (5 HSPs)
chr7 (203-384)||(24760872-24761052)
chr7 (148-195)||(24761536-24761583)
chr7 (148-195)||(24761167-24761214)
chr7 (82-121)||(24761210-24761249)
chr7 (82-121)||(24761579-24761618)
[»] chr6 (4 HSPs)
chr6 (203-384)||(4160061-4160242)
chr6 (14-82)||(6781266-6781336)
chr6 (293-373)||(1179289-1179369)
chr6 (10-57)||(6666936-6666985)
[»] chr3 (5 HSPs)
chr3 (203-384)||(52128307-52128487)
chr3 (148-195)||(52128971-52129018)
chr3 (148-195)||(52128602-52128649)
chr3 (82-121)||(52128645-52128684)
chr3 (82-121)||(52129014-52129053)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 3004464 - 3004073
Alignment:
Q  10 acatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacac-------------- 93  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  3004464 acatcatcatttacttgatcagcatctgtcccgtcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacacttgaccactaaaca 3004365  T
Q  94 -aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaactacactga 192  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004364 caaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaactacactga 3004265  T
Q  193 tttaaaaattaccagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgaga 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004264 tttaaaaattaccagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgaga 3004165  T
Q  293 agtaagtgatctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 384  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004164 agtaggtgatctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 3004073  T

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Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 54654511 - 54654130
Alignment:
Q  10 acatcatcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacac-------------- 93  Q
    |||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  54654511 acatcatcattgtcttgatcagcatctgtcccctcctggttgaattcaatcccatcttgtttgtgctctatatcaccactaaacacttgaccactaaaca 54654412  T
Q  94 -aaagaacgccaactgaaaaacacaaatgcagtcaccacgacacatacttaatcaaaatgggattggaaacaaacataattagcaaataaactacactga 192  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  54654411 caaagaacgccaactgaaaaacacaaatgcagtcaccgcgacacatacttaatcaaaatgggatttgaaacaaatataattagcaaataaactacactga 54654312  T
Q  193 tttaaaaattaccagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgaga 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54654311 tttaaaaattaccagaagtagcaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaagctcattgatgtatgaactctggcaaatgaga 54654212  T
Q  293 agtaagtgatctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 384  Q
    ||||||||||||||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||||||| ||||||||||    
T  54654211 agtaagtgatctcagaatattatttgaccaatcaaatgtgatcc----------aaattaaatactatgcatcccaacatacctttacacat 54654130  T

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Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 203 - 384
Target Start/End: Complemental strand, 24761052 - 24760872
Alignment:
Q  203 accagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgagaagtaagtgat 302  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24761052 accagaagtgacaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaagct-attgatgtatgaactgtggcaaatgagaagtaagtgat 24760954  T
Q  303 ctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 384  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  24760953 ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacat 24760872  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 24761583 - 24761536
Alignment:
Q  148 aaatgggattggaaacaaacataattagcaaataaactacactgattt 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24761583 aaatgggattggaaacaaacataattagcaaataaactatactgattt 24761536  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 24761214 - 24761167
Alignment:
Q  148 aaatgggattggaaacaaacataattagcaaataaactacactgattt 195  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  24761214 aaatgggatcggaaacaaacataattagcaaataaactatactgattt 24761167  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 24761249 - 24761210
Alignment:
Q  82 accactaaacacaaagaacgccaactgaaaaacacaaatg 121  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761249 accactaaacacaaagaacaccaactgagaaacacaaatg 24761210  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 24761618 - 24761579
Alignment:
Q  82 accactaaacacaaagaacgccaactgaaaaacacaaatg 121  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  24761618 accactaaacacaaagaacaccaactgagaaacacaaatg 24761579  T

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Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 203 - 384
Target Start/End: Original strand, 4160061 - 4160242
Alignment:
Q  203 accagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgagaagtaagtgat 302  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  4160061 accagaagtagcaaatagaagcaatgatcaacatggttaagctgaagtatttaaagaagctcattgatgtatgaaatgtggcaaatgagaagcaagtgat 4160160  T
Q  303 ctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 384  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4160161 ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatacctatacacat 4160242  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 6781266 - 6781336
Alignment:
Q  14 catcatttacttgatcggcatctgtcc--tcctggttgaattcaatcccatcttgtttgtgctctatatca 82  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||    
T  6781266 catcatttacttgatcagcatctgtcccctcctggttgaattcaattccatcttgtttgtgctcgatatca 6781336  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 1179369 - 1179289
Alignment:
Q  293 agtaagtgatctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacata 373  Q
    |||| ||| |||||||||||||||||| | ||  ||||||||||||||||| ||||| ||||| || ||||||||| ||||    
T  1179369 agtaggtgttctcagaatattatttgacccatggaatgtgatccaaatgctgccaaaataaattctgtgcatcccagcata 1179289  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 6666985 - 6666936
Alignment:
Q  10 acatcatcatttacttgatcggcatctgt--cctcctggttgaattcaat 57  Q
    ||||||||||| |||||||||||||||||  |||||||||||||| ||||    
T  6666985 acatcatcattaacttgatcggcatctgtcccctcctggttgaatccaat 6666936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 203 - 384
Target Start/End: Complemental strand, 52128487 - 52128307
Alignment:
Q  203 accagaagtagcaaatagaagcagtgatcaatatgattaagctgaagtattaaaagaagctcattgatgtatgaactgtggcaaatgagaagtaagtgat 302  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52128487 accagaagtgacaaatagaagcagtgatcaatatggttaagctgaagtattaaaagaagct-attgatgtatgaactgtggcaaatgagaagtaagtgat 52128389  T
Q  303 ctcagaatattatttgatcaatcaaatgtgatccaaatgctaccaaattaaatactatgcatcccaacatatctttacacat 384  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  52128388 ctcagaatattatttgaccaatcaaatgtgatccaaatgctaccaaattaaataatatgcatcccaacatacctatacacat 52128307  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 52129018 - 52128971
Alignment:
Q  148 aaatgggattggaaacaaacataattagcaaataaactacactgattt 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52129018 aaatgggattggaaacaaacataattagcaaataaactatactgattt 52128971  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 52128649 - 52128602
Alignment:
Q  148 aaatgggattggaaacaaacataattagcaaataaactacactgattt 195  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  52128649 aaatgggatcggaaacaaacataattagcaaataaactatactgattt 52128602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 52128684 - 52128645
Alignment:
Q  82 accactaaacacaaagaacgccaactgaaaaacacaaatg 121  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52128684 accactaaacacaaagaacaccaactgagaaacacaaatg 52128645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 52129053 - 52129014
Alignment:
Q  82 accactaaacacaaagaacgccaactgaaaaacacaaatg 121  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  52129053 accactaaacacaaagaacaccaactgagaaacacaaatg 52129014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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