View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4901-Insertion-1 (Length: 1015)
Name: NF4901-Insertion-1
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4901-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 779; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 127 - 1013
Target Start/End: Complemental strand, 31334689 - 31333803
Alignment:
| Q |
127 |
tcatattcctgagaatgatttttataaccaagaaacaaacatcccaagtcgtagtatcttctgaggtccaattcaaagagcacagctctaattttgcagt |
226 |
Q |
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| T |
31334689 |
tcatattcctgagaatgatttttataaccaagaaacaaacatcccaagtcgtagtatcttctgaggtccaattcaaagagcacagctctaattttgcagt |
31334590 |
T |
|
| Q |
227 |
ctagattggaccattgaatgatattcaaaaattccctagaaggcaaagaaggcaatcatgcaggggggtcactcttcaagggcccctggggtcccttggg |
326 |
Q |
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| T |
31334589 |
ctagattggaccattgaatgatattcaaaaattccctagaaggcaaagaaagcaatcatgcagggg--tcactcttcaagggcccctagggtcccttggg |
31334492 |
T |
|
| Q |
327 |
tgtatgcaagtcctcagagaaagggattgggatctgtttcaatgttttgagatctgtgattaagtctccaacctcatttggaaggacttggctgtcagta |
426 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31334491 |
tgtatgcaagtcctcaga--aagggattgggatctgtttcaatgttttgagatccgtgattaagtctccaacctcatttggaagaacttggctgtcagta |
31334394 |
T |
|
| Q |
427 |
gttgcaaattgcaattcaagtagacatacaaatcactatcattcgtgcaaagatcaaattgctcttgttaaagaataaggatttcaacttatttgagctc |
526 |
Q |
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| T |
31334393 |
gttgcaaattgcaattcaagtagacatacaaatcactatcattcgtgcaaagatcaaattgctcttgttaaagaataaggatttcaacttatttgagctc |
31334294 |
T |
|
| Q |
527 |
ttactcgaacgagag--taaatattaatttaacacctaatgactatgatgccttttgatcactcttgagatcaaagtaggaagtgcttcgatctccaaat |
624 |
Q |
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| T |
31334293 |
ttactcgaacgagagagtaaatattaatttaacacctaatgactatgatgccttttgatcactcttgagatcaaagtaggaagtgcttcgatctccaaat |
31334194 |
T |
|
| Q |
625 |
atgatccaatgttgtttcactggtaccataataagtcattcttgtatagaatagccttataatatctccacaatttatgaaattctccaaattgtggtta |
724 |
Q |
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| T |
31334193 |
atgatccaatgttgtttcactggtaccataataagtcattcttgtatagaatagccttacaatatctccacaatttatgaaattctccaaattgtggtta |
31334094 |
T |
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| Q |
725 |
atcatccattttccagtcaattcctttcaacctagctagcaatatcttgtgaaagataatgcaagatccacttgagttacattcatcgactgtatcctga |
824 |
Q |
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| T |
31334093 |
atcatccattttccggtcaattcctttcaacctagctagcaatatcttgtgaaagataatgcaaaatccacttgagttgcattcatcgactgtatcctga |
31333994 |
T |
|
| Q |
825 |
aactcgttaaatacttgagttcaagtatgagctacatttcacgactcgaaaggaaaggtacaggtcccaaatttgccatcatcaaaaggcctagcctacc |
924 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
31333993 |
aactcgttgaatacttgagttcaagtatgagctacatttcacgactcgaaaggaaaggtacaggtcccaaa-tagccatcatcaaaaggcctagcctacc |
31333895 |
T |
|
| Q |
925 |
cttgattatggttcagacattatatcgagt-agagtctatggttcaaatccatggaaa-taaacagatggatc-accctaacattctcaaac |
1013 |
Q |
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| T |
31333894 |
cttgattatggttcaaacattatatcgagtaagagtctatggttcaaatccatggaaattaaacagatggatcaaccccaacattctcaaac |
31333803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 31334776 - 31334675
Alignment:
| Q |
6 |
cattttcttgagaataaaaacatgaaaaaatttattcctgaaaatgctttatatccgggaattaatttcctaactttctaacaaacatcatattcctgag |
105 |
Q |
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| T |
31334776 |
cattttcttgagaataaaaacatgaaaaaatctattcctgaaaatgctttatatccgggaattaatttcctaactttctaacaaacatcatattcctgag |
31334677 |
T |
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| Q |
106 |
aa |
107 |
Q |
| |
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|| |
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| T |
31334676 |
aa |
31334675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 2766371 - 2766312
Alignment:
| Q |
34 |
aatttattcctgaaaatgctttatatccgggaattaatttcctaactttctaacaaacat |
93 |
Q |
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||||||||| |||||||||||||||||| |||||||||||| ||| || |||||||||| |
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| T |
2766371 |
aatttattcatgaaaatgctttatatccaagaattaatttcccaaccttgtaacaaacat |
2766312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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