View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4901-Insertion-4 (Length: 252)
Name: NF4901-Insertion-4
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4901-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 5038527 - 5038283
Alignment:
| Q |
8 |
gtttgtttctacatgattatcttgtccaacgcctgtgttgcttattttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaa |
107 |
Q |
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| T |
5038527 |
gtttgtttctacatgattatcttgtccaacgcctgtgttgcttattttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaa |
5038428 |
T |
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| Q |
108 |
aacttgcgggcagcagcacaagaacaatacaacaggcactcaaataccagaaactccacaaacagccacaaaaaagctcccacagcgcatgacggaaagc |
207 |
Q |
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| T |
5038427 |
aacttgcgggcagcagcacaagaacaatacaacgggcactcaaataccagaaactccacaaacagccacaaaaaagctcccacagcgcatgacagaaagc |
5038328 |
T |
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| Q |
208 |
ctgtagggagcaaaaaccagaaaacgtaaacagccactgctaaca |
252 |
Q |
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| T |
5038327 |
ctgtaggaagcaaaaaccagaaaacgaaaacagccactgctaaca |
5038283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 34514725 - 34514900
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaaacttgcgggcagcagcacaagaacaatacaacaggcactcaaa |
151 |
Q |
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| T |
34514725 |
ttttttagaatcagcaaattttattcaca-caagcgtgtgcaagaaacacaacaaaaactcgcgggcag---cacaagaacaatacgacagacactgaaa |
34514820 |
T |
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| Q |
152 |
taccagaaactccacaaacagccacaaaaaagctcccacagcgcatgacggaaagcctgtagggagcaaaaaccagaaaac |
232 |
Q |
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| T |
34514821 |
taccagaaaccccacaaacagcaac-aaaaagctcccacaacgcatgacagaaagcctgtaagaagcaaaaaccagaaaac |
34514900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 11889406 - 11889347
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaaact |
111 |
Q |
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| T |
11889406 |
ttttttagaatcagcaaaatttattcacaacgagcgcgtgtaagtaacacaactaaaact |
11889347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 34799727 - 34799776
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacac |
101 |
Q |
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| T |
34799727 |
ttttttagaatcagcaaatttgattcactacgagcgcgtgtaagaaacac |
34799776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 47644294 - 47644474
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaaacttgcgggcagcagcacaagaacaatacaa-caggcactcaa |
150 |
Q |
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| T |
47644294 |
ttttttagaatcagtaaaatttattcgcaacgagcgtgtgcaagaaacacaacaaaa-ctcacggacagcagcacaggaacaatacaaacaggcgctgaa |
47644392 |
T |
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| Q |
151 |
ataccagaaactccacaaacagccacaaaaaagctcccacagcgcatgacggaaagcctgtagggagcaaaaaccagaaaac |
232 |
Q |
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| T |
47644393 |
ataccagaaacctcacaaacagcaacaaaaaagctccctcagcgcatgacagcaagcgtgtaggaagcaaaaaccagaaaac |
47644474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 20702095 - 20702149
Alignment:
| Q |
54 |
ttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaa |
108 |
Q |
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| T |
20702095 |
ttttagaatcagcaaaatttattcacaacgagtgcgtgcaaggaacgcaacaaaa |
20702149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 16210672 - 16210600
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaaacttgcgggcagcagc |
124 |
Q |
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| T |
16210672 |
ttttttagaatcggcaaaatttattcacaacgagagcgtgcaagaaacacaactaaaactcgcggccagcagc |
16210600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 27754330 - 27754266
Alignment:
| Q |
52 |
ttttttagaatcagcaaattttattcacaacgagcgtgtgcaagaaacacaacaaaaacttgcgg |
116 |
Q |
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| T |
27754330 |
ttttttagaaacggcaaattttattcacgacaagtgtgtgcaagaagcacacaaaaaactcgcgg |
27754266 |
T |
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