View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4901-Insertion-5 (Length: 434)

Name: NF4901-Insertion-5
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4901-Insertion-5
NF4901-Insertion-5
[»] chr1 (9 HSPs)
chr1 (7-434)||(45550115-45550541)
chr1 (189-342)||(45545035-45545188)
chr1 (196-349)||(45544125-45544281)
chr1 (190-325)||(45548928-45549063)
chr1 (223-349)||(45549819-45549948)
chr1 (347-422)||(45549605-45549680)
chr1 (349-421)||(45550837-45550909)
chr1 (53-120)||(45544343-45544410)
chr1 (346-410)||(45545621-45545685)
[»] chr4 (1 HSPs)
chr4 (8-120)||(36615880-36615992)
[»] chr5 (3 HSPs)
chr5 (37-143)||(19670886-19670993)
chr5 (179-244)||(19691998-19692064)
chr5 (262-314)||(19671100-19671152)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Complemental strand, 45550541 - 45550115
Alignment:
Q  7 ataccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattga 106  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45550541 ataccttagaaacttaggtatgatcggttaagttttgttaaaaatagattcaatgaaaacaatacaagacaatagagacgttcatttttatttacattga 45550442  T
Q  107 gattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgaccctaacaatttgttttccattgagttaatactttcatgtgtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45550441 gattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgacactaacaatttgttttccattgagttaatactttcatgtgtg 45550342  T
Q  207 ttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacagaacca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550341 ttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacagaacca 45550242  T
Q  307 aaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45550241 aaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatccaagtggggaaggtg 45550142  T
Q  407 agtaagacaattcaacggaagtttccga 434  Q
    |||||||||||||||| |||||||||||    
T  45550141 agtaagacaattcaac-gaagtttccga 45550115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 189 - 342
Target Start/End: Complemental strand, 45545188 - 45545035
Alignment:
Q  189 ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtca 288  Q
    ||||||||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  45545188 ttaatactttcatttgcgttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtca 45545089  T
Q  289 aaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccct 342  Q
    ||||||||||||||||||||||||||||||| |||||  |||| ||||||||||    
T  45545088 aaacctaccacagaaccaaaaatccagtcatatgttgctgacactgaataccct 45545035  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 45544281 - 45544125
Alignment:
Q  196 tttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagt---caaaac 292  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||     |||| |    
T  45544281 tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacattacaccgcttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatc 45544182  T
Q  293 ctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcctgctg 349  Q
    ||||||| ||| ||||||||||| ||| ||||   ||||||||||||||| ||||||    
T  45544181 ctaccactgaaacaaaaatccagccatttgttactgacattgaatacccttctgctg 45544125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 325
Target Start/End: Complemental strand, 45549063 - 45548928
Alignment:
Q  190 taatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaa 289  Q
    ||||| |||||||| |||||| || ||| ||||| |||| ||||||| |  ||| |||| ||||||||||| |||||||||||||||||||||||| |||    
T  45549063 taataatttcatgtatgttggtttacaggaagtggtgaagtaaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaa 45548964  T
Q  290 aacctaccacagaaccaaaaatccagtcatctgttg 325  Q
    |||||||||||||||||||||||||| || ||||||    
T  45548963 aacctaccacagaaccaaaaatccagccacctgttg 45548928  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 349
Target Start/End: Complemental strand, 45549948 - 45549819
Alignment:
Q  223 gatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatg---atgagtcaaaacctaccacagaaccaaaaatccagtcat 319  Q
    ||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||   ||||| |||||||||||||||||| ||| |||||| |||    
T  45549948 gatgaaagaaaagacattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccat 45549849  T
Q  320 ctgttgtcgacattgaataccctcctgctg 349  Q
    |||||   |||| |||||||||||||||||    
T  45549848 ctgttactgacactgaataccctcctgctg 45549819  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 45549680 - 45549605
Alignment:
Q  347 ctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaac 422  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||| | |||||||||    
T  45549680 ctgaggcatatactcttcccaattatcaaaccaaagacgctgattcaagtgggaaaggtgagtaggtcaattcaac 45549605  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 45550909 - 45550837
Alignment:
Q  349 gaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagtaagacaattcaa 421  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||| |||| | ||||||||| | ||||||||    
T  45550909 gaggaatatactcttcccaattatcaaaccaaagaaactgatccaagtggtgcaggtgagtaggccaattcaa 45550837  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 45544410 - 45544343
Alignment:
Q  53 gattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaattt 120  Q
    |||||||||||||||||| ||| |||||||  | ||| |||||||||||||||| ||||||| |||||    
T  45544410 gattcaatgaaaataatataagtcaatagactcattcttttttatttacattgatattcaatcaattt 45544343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 45545685 - 45545621
Alignment:
Q  346 gctgaggcatatactcttcccaattatcaaatcaaagacactgatccatgtggggaaggtgagta 410  Q
    ||||||||||||||| |||||| ||| |||| |||||||||| |||||  || ||||||||||||    
T  45545685 gctgaggcatatacttttcccacttaccaaaccaaagacactaatccaaatgaggaaggtgagta 45545621  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 36615880 - 36615992
Alignment:
Q  8 taccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgag 107  Q
    ||||||||||| ||| |||||| | ||  |||||||||||||||| ||||| |||||||||||||||||||||||  | ||||||||||||| ||||||     
T  36615880 taccttagaaatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgcattgac 36615979  T
Q  108 attcaataaattt 120  Q
    ||||||| |||||    
T  36615980 attcaatcaattt 36615992  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 19670886 - 19670993
Alignment:
Q  37 agttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaatttcttgga-ttaggataa 135  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |  | ||||||||||||| ||||| |||||||| ||||| |||||  || |||||    
T  19670886 agttttgttaaaaatatattcaatgaaaataatacaagacaatatattcattcatttttatttgcattgtgattcaatcaattttttggagataagataa 19670985  T
Q  136 aatgtgaa 143  Q
    ||||||||    
T  19670986 aatgtgaa 19670993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 19691998 - 19692064
Alignment:
Q  179 ttccattgag-ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacac 244  Q
    |||||||||| ||||||||||||| ||||||||||   |||||||||| |||||||| |||||||||    
T  19691998 ttccattgagattaatactttcatatgtgttggctcatagaaagtgattaaataaaatacattacac 19692064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
Q  262 gagagaatgaatgtgcatgatgagtcaaaacctaccacagaaccaaaaatcca 314  Q
    |||| ||||||||||||||||||| | ||||| || |||||||||||||||||    
T  19671100 gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca 19671152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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