View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4901-Insertion-6 (Length: 379)
Name: NF4901-Insertion-6
Description: NF4901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4901-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 54616411 - 54616051
Alignment:
| Q |
8 |
gacattcccatagcttgaaaagatgcatttgcatcacaagtaggaaaaacctgtgtaaggaatcaacatattaatattacagatttaaaattaagctata |
107 |
Q |
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| T |
54616411 |
gacattcccatagcttgaaaagatgcatttgcatcacaattaggaaaaacctgtgtgaggaatcagcatattaatattacagatttaaaattaag----- |
54616317 |
T |
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| Q |
108 |
attaagtgaaaagtgaaaagtgaaattcttccatctgcatattctttattacgtacctctttttcaaatagatcatcaatattgaaatcaagccttggat |
207 |
Q |
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| T |
54616316 |
------tgaaaagtgaaaagtgaaattcttccatctgcatattctttattacgtacctctttttcaaatagatcatcaatattgaaatcaagccttggat |
54616223 |
T |
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| Q |
208 |
tcacagtagctaatttcattgacaagaactgcaaagaaaattaacatagatcaatgtgataggcaaattaagaatcaatgtaatgaacctaattaactaa |
307 |
Q |
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| T |
54616222 |
tcacagtagctaatttcattgacaagaactgcaaagaaaattaacatagatcaatgtgataggcaaattaagaatcaatgtaatgaacctaattaactaa |
54616123 |
T |
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| Q |
308 |
ttacctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcattccagcttttcctgtaa |
379 |
Q |
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| T |
54616122 |
ttacctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcattccagcttttcctgtaa |
54616051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 26484534 - 26484468
Alignment:
| Q |
310 |
acctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcattccagcttttcctg |
376 |
Q |
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| T |
26484534 |
acctcgacttgtctttgaagagactgaacatagttaataatttcatcaagcattccagctttgcctg |
26484468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 26484700 - 26484640
Alignment:
| Q |
180 |
tcatcaatattgaaatcaagccttggattcacagtagctaatttcattgacaagaactgca |
240 |
Q |
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| T |
26484700 |
tcatcaatgttgaagtcaagtcttgggtttacagctgctaatttcattgacaagaactgca |
26484640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 27329932 - 27329879
Alignment:
| Q |
309 |
tacctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcat |
362 |
Q |
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| T |
27329932 |
tacctcaacttgttgctgaagagactgtacataattaatgatttcatctagcat |
27329879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 21357774 - 21357827
Alignment:
| Q |
309 |
tacctcaacttgtttttgaagagactgaacatagttaatgatttcatcaagcat |
362 |
Q |
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| T |
21357774 |
tacctcaacttgtcgttgaagtgactgtacatagttgatgatttcatccagcat |
21357827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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